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View Structure Prediction Details

Protein: gi|38603808, gi|...
Organism: Arabidopsis thaliana
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38603808, gi|....

Description E-value Query
Range
Subject
Range
gi|12322575, gi|... - pir||E86456 unknown protein [imported] - Arabidopsis thaliana, gi|12322575|gb|AAG51289.1|AC027035_1...
277.0 [0..1] [369..1]
gi|84784315 - gi|84784315|gb|ABC62079.1| neuropathy target esterase [Gallus gallus]
184.0 [0..26] [368..147]
gi|115485843, gi... - gi|115485843|ref|NP_001068065.1| Os11g0546300 [Oryza sativa (japonica cultivar-group)], gi|113645287...
184.0 [0..46] [361..56]
gi|86438572, gi|... - gi|86438572|gb|AAI12749.1| Patatin-like phospholipase domain containing 6 [Bos taurus], gi|115497524...
184.0 [0..26] [368..366]
gi|5802543, gi|7... - gi|7657401|ref|NP_056616.1| patatin-like phospholipase domain containing 6 [Mus musculus], gi|580254...
183.0 [0..26] [368..873]
gi|109109642 - gi|109109642|ref|XP_001117679.1| PREDICTED: similar to chromosome 9 open reading frame 111, partial ...
182.0 [0..4] [368..153]
gi|109494955, gi... - gi|109496318|ref|XP_001057249.1| PREDICTED: similar to neuropathy target esterase [Rattus norvegicus...
182.0 [0..26] [368..890]

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Predicted Domain #1
Region A:
Residues: [1-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSLRSTPF ISLRTRKSFN LSPRILALRL SCCSGGSSQN QNFSTDSENK RSFAVATGEL  60
   61 FIGIASRLLK SSNQKTPPID DGDRIASVIE DEIEPAMIWE QRVKDVEAEK ERRVITSPGF 120
  121 SFSAAGLLFP YHLGVAQLLI EKGYIKETTP LAGSSAGAIV CAVITSGATM REALEATKEL 180
  181 AYDCRRNGTA FRLGAVLRES MERLLPDDIH IRSNGRIRVA ITQVFWRPRG LLVDQFDSKS 240
  241 DLIDAVFTSS FIPGYLAPRP ATMFRNRLCV DGGLTLFMPP TAAAKTVRVC AFSASN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 1cjyA
Description: Domain from cytosolic phospholipase A2; Cytosolic phospholipase A2 catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [297-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKLKGIEICP DCNPLNRATS RQLLNWALEP AEDEVLERLF ELGYADAATW AEMNPVEGLV  60
   61 YDDTPTAQEI PTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle