YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37693198
Organism:	Plasmodium falciparum
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37693198.

Description	E-value	Query Range	Subject Range
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	151.0	[0..15]	[342..309]
gi\|42544808, gi\|... - gi\|46108454\|ref\|XP_381285.1\| hypothetical protein FG01109.1 [Gibberella zeae PH-1], gi\|42544808\|gb\|E...	143.0	[0..1]	[342..250]
gi\|83767208 - gi\|83767208\|dbj\|BAE57347.1\| unnamed protein product [Aspergillus oryzae] gi\|169769759 - gi\|169769759\|ref\|XP_001819349.1\| hypothetical protein [Aspergillus oryzae RIB40]	143.0	[0..16]	[342..171]
gi\|109470339 - gi\|109470339\|ref\|XP_001078382.1\| PREDICTED: similar to GDP-fucose transporter 1 isoform 1 [Rattus no...	142.0	[0..1]	[341..332]
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	141.0	[0..50]	[332..423]
gi\|49093248, gi\|... - gi\|67526981\|ref\|XP_661552.1\| hypothetical protein AN3948.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	140.0	[0..5]	[342..103]
gi\|85111291 - gi\|85111291\|ref\|XP_963867.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32420179, gi\|... - gi\|32420179\|ref\|XP_330533.1\| hypothetical protein [Neurospora crassa], gi\|28925610\|gb\|EAA34631.1\| hy...	137.0	[0..11]	[342..254]
gi\|111068282 - gi\|111068282\|gb\|EAT89402.1\| hypothetical protein SNOG_02671 [Phaeosphaeria nodorum SN15]	133.0	[0..21]	[341..203]

Back

Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKIQKSSGM FWKRNSESSN LYNFLNGLFC IGGIYFFFII FGYYQEKLPQ LGRGSDRFYY  60
   61 NIFLICVLCL SNSLCSLSAI FFKSRLNNEN V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLKKNVDK YFIKQIMLIS ITYSIAMIAT NYSLSHVNFP TQVLVKSGKM IPIVVGGYFF  60
   61 FGKKYPYYDY ISVFLITSSL VLFNLLRTKS SKEVH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.98
Match:	2i68A
Description:	No description for 2i68A was found.

Predicted Domain #3

Region A:
Residues: [187-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTTFGILLLC ISLLCDGLTG PRQDKLLSKY NVDSVNLMFY VNIFAFIFNL LASLIIEGNK  60
   61 PYIFLQKYTT SYYYILAFSV SGTLGQFFVF YSLRVYGSLY TSLFTTLRKA LSTVVSVYLF 120
  121 GHVLKPLQWI CIGVIFSTLI VQSYLKKQSK KVQSKNK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits