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View Structure Prediction Details

Protein: gi|55770563
Organism: SPECIES UNKNOWN
Length: 1117 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|55770563.

Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPGLSRRRR PDAAALLCCV VAVVAACMVG GALAADAQGA ALLAWKRTLR GGDTALPDWN  60
   61 PADASPCRWT GVRCNA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.221849
Match: 1ogqA
Description: Polygalacturonase inhibiting protein PGIP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [77-785]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGRVTELSLQ QVDLLGGVPD NLSAAMGTTL ERLVLAGANL SGPIPAQLGD LPALTHLDLS  60
   61 NNALTGSIPA SLCRPGSKLE SLYVNSNHLE GAIPDAIGNL TALRELIIFD NQLDGAIPAS 120
  121 IGQMASLEVL RGGGNKNLQG ALPPEIGNCS KLTMLGLAET SISGPLPATL GQLKNLNTLA 180
  181 IYTALLSGPI PPELGRCTSL ENIYLYENAL SGSIPAQLGG LANLKNLLLW QNNLVGVIPP 240
  241 ELGACTGLAV VDLSMNGLTG HIPASLGNLS SLQELQLSVN KVSGPIPAEL SRCTNLTDLE 300
  301 LDNNQISGAI PAELGKLTAL RMLYLWANQL TGTIPPEIGG CAGLESLDLS QNALTGPIPR 360
  361 SLFRLPRLSK LLLIDNTLSG EIPPEIGNCT SLVRFRASGN HLAGDIPPEV GKLGSLSFLD 420
  421 LSTNRLSGAI PPEIAGCRNL TFVDLHGNAI AGVLPPGLFQ GTPSLQYLDL SYNAIGGAIP 480
  481 ANIGMLGSLT KLVLGGNRLS GQIPPEIGSC SRLQLLDLSG NSLTGAIPAS IGKIPGLEIA 540
  541 LNLSCNGLSG AIPKGFAGLA RLGVLDVSHN QLTGDLQPLS ALQNLVALNI SYNNFTGRAP 600
  601 ETAFFARLPA SDVEGNPGLC LSRCPGDASD RERAARRAAR VATAVLLSAL VALLAAAAFV 660
  661 LFGRRRQPLF GRGSTSPADG DGKDADMLPP WDVTLYQKLE ISVGDVARS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.0
Match: 3cigA
Description: No description for 3cigA was found.

Predicted Domain #3
Region A:
Residues: [786-1117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTPANVIGQG WSGAVYRASI PSTGVAIAVK KFRSSDEASV DAFACEVGVL PRVRHRNIVR  60
   61 LLGWAANRRT RLLFYDYLPN GTLGGLLHGG GAAIGAAVVE WEVRLSIAVG VAEGLAYLHH 120
  121 DSVPAILHRD VKSDNILLGE RYEACLADFG LARVADDGAN SSPPPFAGSY GYIAPEYGCM 180
  181 TKITTKSDVY SFGVVLLEII TGRRPIEAAF GEGQTVVQWV REHLHRKRDP AEVIDSRLQG 240
  241 RSDTQVQEML QALGIALLCA STRPEDRPTM KDVAALLRGL RHDDSAEAQK AGSGSAIKWA 300
  301 DPRQPGSPTK PMAQAQAHSH TSSLAYSTTG SV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.221849
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle