YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23497221, gi\|...
Organism:	Plasmodium falciparum 3D7
Length:	381 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23497221, gi|....

Description	E-value	Query Range	Subject Range
gi\|56526401 - gi\|56526401\|emb\|CAH78914.1\| dimethyladenosine transferase, putative [Plasmodium chabaudi chabaudi] gi\|70953687 - gi\|70953687\|ref\|XP_745929.1\| dimethyladenosine transferase [Plasmodium chabaudi chabaudi]	258.0	[0..3]	[378..12]
gi\|23483724 - gi\|23483724\|gb\|EAA19302.1\| dimethyladenosine transferase, putative [Plasmodium yoelii yoelii] gi\|82753583 - gi\|82753583\|ref\|XP_727737.1\| dimethyladenosine transferase [Plasmodium yoelii yoelii str. 17XNL]	255.0	[0..18]	[374..1]
gi\|56497848 - gi\|56497848\|emb\|CAH94950.1\| dimethyladenosine transferase, putative [Plasmodium berghei] gi\|68071473 - gi\|68071473\|ref\|XP_677650.1\| dimethyladenosine transferase [Plasmodium berghei strain ANKA]	254.0	[0..15]	[380..19]
gi\|66475300 - gi\|66475300\|ref\|XP_627466.1\| Dim1p-like ERMB/KSGA methylase [Cryptosporidium parvum Iowa II] gi\|32398681, gi\|... - gi\|46228931\|gb\|EAK89780.1\| Dim1p-like ERMB/KSGA methylase [Cryptosporidium parvum Iowa II], gi\|32398...	250.0	[0..23]	[380..10]
gi\|65304135 - gi\|65304135\|emb\|CAI76514.1\| dimethyladenosine transferase, putative [Theileria annulata] gi\|84996835 - gi\|84996835\|ref\|XP_953139.1\| dimethyladenosine transferase [Theileria annulata strain Ankara]	235.0	[0..60]	[377..58]
DIM1_MACFA - Probable dimethyladenosine transferase OS=Macaca fascicularis GN=DIMT1 PE=2 SV=1	228.0	[0..69]	[353..27]
DIM1_MOUSE - Probable dimethyladenosine transferase OS=Mus musculus GN=Dimt1 PE=2 SV=1	227.0	[0..69]	[353..27]
DIM1_BOVIN - Probable dimethyladenosine transferase OS=Bos taurus GN=DIMT1 PE=2 SV=1	227.0	[0..69]	[353..27]
DIMT1L - DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) gi\|123995987, gi... - gi\|123996331\|gb\|ABM85767.1\| dimethyladenosine transferase [synthetic construct], gi\|123995987\|gb\|ABM... gi\|114600097 - gi\|114600097\|ref\|XP_517743.2\| PREDICTED: dimethyladenosine transferase isoform 3 [Pan troglodytes]	226.0	[0..69]	[353..27]
gi\|110590504, gi... - gi\|110590505\|pdb\|2H1R\|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From Plasmodiu...	226.0	[0..75]	[355..19]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSYFLNNCL KLFKNNIVTM KVNKGFYNNI INNNKSTKII KNVSDGISKK SHGKRNISTS  60
   61 KVQKGNKMNM I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.154902
Match:	1uwvA
Description:	Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [72-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYKKHGQHLL KNPGILDKII YAAKIKSSDI VLEIGCGTGN LTVKLLPLAK KVITIDIDSR  60
   61 MISEVKKRCL YEGYNNLEVY EGDAIKTVFP KFDVCTANIP YKISSPLIFK LISHRPLFKC 120
  121 AVLMFQKEFA ERMLANVGDS NYSRLTINVK LFCKVTKVCN VNRSSFNPPP KVDSVIVKLI 180
  181 PKESSFLTNF DEWDNLLRIC FSRKRKTLHA IFKRNAVLNM LEHNYKNWCT LNKQVPVNFP 240
  241 FKKYCLDVLE HLDMCEKRSI NLDENDFLKL LLEFNKKGIH FFNISNVKNN DMTNIFLDDD 300
  301 MNDSDQNVDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.154902
Match:	2h1rA
Description:	No description for 2h1rA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits