YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28974401
Organism:	Plasmodium falciparum
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28974401.

Description	E-value	Query Range	Subject Range
ADE_ACIAD - Adenine deaminase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=ACIAD1245 PE=3 SV=1	263.0	[0..28]	[365..1]
ADE_HAHCH - Adenine deaminase OS=Hahella chejuensis (strain KCTC 2396) GN=HCH_01503 PE=3 SV=1	257.0	[0..35]	[366..3]
gi\|84379137, gi\|... - gi\|84385821\|ref\|ZP_00988851.1\| adenosine deaminase [Vibrio splendidus 12B01], gi\|84379137\|gb\|EAP9599...	253.0	[0..36]	[364..4]
ADD_CLOAB - Adenosine deaminase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 /... ADD_CLOAB - Adenosine deaminase OS=Clostridium acetobutylicum GN=add PE=3 SV=1	253.0	[0..31]	[366..1]
ADD2_VIBPA, ADE_... - Adenine deaminase OS=Vibrio parahaemolyticus GN=VPA1292 PE=3 SV=1, Adenosine deaminase 2 OS=Vibrio p... ADE_VIBPA - Adenine deaminase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA1292 PE=3 SV...	251.0	[0..36]	[365..4]
gi\|90327787, gi\|... - gi\|90411258\|ref\|ZP_01219270.1\| adenosine deaminase [Photobacterium profundum 3TCK], gi\|90327787\|gb\|E...	250.0	[0..35]	[363..3]
ADE_WOLSU, ADD_WOLSU - Adenine deaminase OS=Wolinella succinogenes GN=WS0737 PE=3 SV=1, Adenosine deaminase OS=Wolinella su... ADE_WOLSU - Adenine deaminase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / ...	249.0	[0..33]	[364..4]
gi\|42524829, gi\|... - gi\|42524829\|ref\|NP_970209.1\| hypothetical protein Bd3476 [Bdellovibrio bacteriovorus HD100], gi\|3957...	249.0	[0..37]	[367..9]
gi\|24113013, gi\|... - gi\|24113013\|ref\|NP_707523.1\| adenosine deaminase [Shigella flexneri 2a str. 301], gi\|24051977\|gb\|AAN... gi\|30041387, gi\|... - gi\|30063138\|ref\|NP_837309.1\| adenosine deaminase [Shigella flexneri 2a str. 2457T], gi\|30041387\|gb\|A... ADD_SHIF8 - Adenosine deaminase OS=Shigella flexneri serotype 5b (strain 8401) GN=add PE=3 SV=1 ADD_SHIFL - Adenosine deaminase OS=Shigella flexneri GN=add PE=3 SV=1	249.0	[0..40]	[365..6]
gi\|238857843, gi... - gi\|238857843\|ref\|ZP_04648072.1\| adenosine deaminase [Enterococcus faecalis TUSoD Ef11], gi\|238829513... ADD_ENTFA - Adenosine deaminase OS=Enterococcus faecalis GN=add PE=3 SV=1 ADD_ENTFA - Adenosine deaminase OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=add PE=3 SV=1	248.0	[0..37]	[365..6]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCKNMDTSY EIINYLTKDE LDIDLSCMDK KERYKIWKRL PKCELHCHLD VCFSVDFFLN  60
   61 VIRKYNIQPN MSDEEIIDYY LFSKPGKSLD EFVEKALRLT DIYIDYTVVE DLAKHAVFNK 120
  121 YKEGVVLMEF RYSPSFMSFK HNLDKDLIHE AIVKGLNEAV ALLEYKIQVG LLCTGDGGLS 180
  181 HERMKEAAEF CIKHKKDFVG YDHAGHEVDL KPFKDIFDNI REEGISLSVH AGEDVSIPNL 240
  241 NSLYTAINLL HVKRIGHGIR VSESQELIDL VKEKDILLEV CPISNVLLNN VKSMDTHPIR 300
  301 MLYDAGVKVS VNSDDPGMFL TNITDNYEEL YTHLNFTLAD FMKMNLWAVQ KSFVDPDIKN 360
  361 KIISKYF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	2pgfA
Description:	No description for 2pgfA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits