YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|34904406, gi|...
Organism: Oryza sativa Japonica Group
Length: 983 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|34904406, gi|....

Predicted Domain #1
Region A:
Residues: [1-983]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVAPETLDT LSGWFAQSLS PDAAARRAAE QSIESAKCSP GFGLALLGLA SSPRHDPQSR  60
   61 LAASVQFKNL LRRRWPKPSP DGGGDDDADH LPPSDCAIIK ANLLQLLLTA PPLIQAQLSE 120
  121 ALAAAAASDF PARWESLLPS IVSSLGTALS AGDIPATNSL LAAAASLFSR FRNAFDSNTI 180
  181 RLDLKYCLEN FAAALLEVFL STSRRLQAAA PTVTPPESRP VFECLRLCCE IFYSLNSIDL 240
  241 PEFFEDHMRE WMTEFRAFLT TSYPPAIEAD GAPDALRAAV CDNLQLYMEK YEEEFRGYLK 300
  301 EFVEAVWGLL MAPSVSPSRG QLAVTAIRFL TTVAESVHHA LFGSPDAMKQ ICDSVVIPNL 360
  361 RLRDDDEELF EGNWVEYVRR DAEGSDADTL RRAACRLLRG LAANYREQVA ALVSAQVQQM 420
  421 LAAYAADRTN NWKEKDAAIY LVISLMQKPG ATGGGTPVVD MESFFTSVIV PELQAPDWES 480
  481 EPMLKATVLR FLKEFKDQIP KATALALLPS VIRFLIHESN VVHSYAATFI ENLLIIKDMV 540
  541 PVPSANVITR APRYVAADIN PYAQPIVQNL SKALSFPESY ENPYLMKCLM RVLGIANIAG 600
  601 QIVHEITARL VGILMEVCNN PKNPDFNHYL FEALAAVIGR AGEQDPALLP VFEASLFPVL 660
  661 QRILVEDISE FWPYAFQIFA QLVNLSRPPL SQNYMQLFGV LLSNATWDRP PCVPALVRLL 720
  721 RAFLRKIPNE LNQEGRLPNI LVIFRSLLSR SSTEDSAFYM LNTLVENVSF DIMNPHINEI 780
  781 WSALFTRLQT RQAVKFVNSL VVFMSLVVVK YGPGVLVSSV DAIQPNIFMT ILQRFWIPNL 840
  841 KFIKGTVEVK LTSVASTKLI CESALLLDGA AAQTWGKLLD SIVALLSRTD QDGAQQDQND 900
  901 GADADSQRTS GYSVSFVRLQ YAGKSEDDLL KEVNDPKQFL VTSLATLSAQ SPGRFGPIIE 960
  961 QNVDPANKGA LIQLCAAYNT NIV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1z3hA
Description: The exportin Cse1 in its cargo-free, cytoplasmic state
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle