YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51589903, gi\|...
Organism:	Yersinia pseudotuberculosis IP 32953
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51589903, gi|....

Description	E-value	Query Range	Subject Range
gi\|77979563, gi\|... - gi\|77979563\|ref\|ZP_00834981.1\| COG0278: Glutaredoxin-related protein [Yersinia intermedia ATCC 29909...	6.0E-35	[1..116]	[1..116]
gi\|238716508, gi... - gi\|77959190\|ref\|ZP_00823212.1\| COG0278: Glutaredoxin-related protein [Yersinia bercovieri ATCC 43970... gi\|77961719, gi\|... - gi\|77961719\|ref\|ZP_00825551.1\| COG0278: Glutaredoxin-related protein [Yersinia mollaretii ATCC 43969...	7.0E-35	[1..116]	[1..116]
gi\|238724930, gi... - gi\|77975302\|ref\|ZP_00830838.1\| COG0278: Glutaredoxin-related protein [Yersinia frederiksenii ATCC 33...	2.0E-34	[1..116]	[1..116]
gi\|22125845, gi\|... - gi\|22125845\|ref\|NP_669268.1\| hypothetical protein y1953 [Yersinia pestis KIM], gi\|21958776\|gb\|AAM855... gi\|45436824, gi\|... - gi\|45441961\|ref\|NP_993500.1\| hypothetical protein YP_2169 [Yersinia pestis biovar Microtus str. 9100...	3.0E-34	[1..116]	[6..121]
GLRX4_PASMU - Glutaredoxin-4 OS=Pasteurella multocida (strain Pm70) GN=grxD PE=3 SV=1 GLRX4_PASMU - Glutaredoxin-4 OS=Pasteurella multocida GN=grxD PE=3 SV=1	7.0E-34	[1..109]	[1..109]
gi\|32030017, gi\|... - gi\|32030017\|ref\|ZP_00132945.1\| COG0278: Glutaredoxin-related protein [Haemophilus somnus 2336], gi\|1...	2.0E-33	[1..108]	[1..108]
gi\|112823220, gi... - gi\|23467039\|ref\|ZP_00122624.1\| COG0278: Glutaredoxin-related protein [Haemophilus somnus 129PT], gi\|...	4.0E-33	[1..108]	[1..108]
gi\|88857860, gi\|... - gi\|88857860\|ref\|ZP_01132502.1\| hypothetical protein PTD2_10759 [Pseudoalteromonas tunicata D2], gi\|8...	5.0E-33	[1..114]	[1..114]
gi\|62127655, gi\|... - gi\|62180022\|ref\|YP_216439.1\| hypothetical protein SC1452 [Salmonella enterica subsp. enterica serova... gi\|168229806, gi... - gi\|205335337\|gb\|EDZ22101.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=ydhD] [protein=hypothetical protein] [protein_id=YP_005237303.1] [location=1521253..1521600] gi\|205327842, gi... - gi\|205327842\|gb\|EDZ14606.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|167551597, gi... - gi\|205323629\|gb\|EDZ11468.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|161363512, gi... - gi\|161614148\|ref\|YP_001588113.1\| hypothetical protein SPAB_01888 [Salmonella enterica subsp. enteric... gi\|56127855, gi\|... - gi\|56413598\|ref\|YP_150673.1\| hypothetical protein SPA1420 [Salmonella enterica subsp. enterica serov... gi\|197093999, gi... - gi\|197362522\|ref\|YP_002142159.1\| hypothetical protein SSPA1320 [Salmonella enterica subsp. enterica ... gi\|197241747, gi... - gi\|197263492\|ref\|ZP_03163566.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica... gi\|16760480 - gi\|16760480\|ref\|NP_456097.1\| hypothetical protein STY1689 [Salmonella enterica subsp. enterica serov... gi\|197249772, gi... - gi\|197249772\|ref\|YP_002146612.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enteric... gi\|194737105, gi... - gi\|194737105\|ref\|YP_002114444.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enteric... gi\|207857063, gi... - gi\|207857063\|ref\|YP_002243714.1\| hypothetical protein SEN1614 [Salmonella enterica subsp. enterica s... gi\|205352853, gi... - gi\|205352853\|ref\|YP_002226654.1\| hypothetical protein SG1685 [Salmonella enterica subsp. enterica se... gi\|238913166 - gi\|238913166\|ref\|ZP_04657003.1\| hypothetical protein SentesTe_18835 [Salmonella enterica subsp. ente... gi\|199602405, gi... - gi\|200389960\|ref\|ZP_03216571.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica... gi\|197940257, gi... - gi\|198245741\|ref\|YP_002215701.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enteric... gi\|168463156, gi... - gi\|195633901\|gb\|EDX52253.1\| glutaredoxin-4 [Salmonella enterica subsp. enterica serovar Newport str.... gi\|205346858, gi... - gi\|205346858\|gb\|EDZ33489.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|168240947, gi... - gi\|205339531\|gb\|EDZ26295.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|168235504, gi... - gi\|197290954\|gb\|EDY30307.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|194470567, gi... - gi\|194470567\|ref\|ZP_03076551.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica... gi\|194448379, gi... - gi\|194448379\|ref\|YP_002045471.1\| hypothetical protein SeHA_C1603 [Salmonella enterica subsp. enteric... gi\|194445820, gi... - gi\|194445820\|ref\|YP_002040682.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enteric... gi\|205343668, gi... - gi\|205343668\|gb\|EDZ30432.1\| putative monothiol glutaredoxin [Salmonella enterica subsp. enterica ser... gi\|213612349 - gi\|213612349\|ref\|ZP_03370175.1\| hypothetical protein SentesTyp_07509 [Salmonella enterica subsp. ent... gi\|213586460 - gi\|213586460\|ref\|ZP_03368286.1\| hypothetical protein SentesTyph_36386 [Salmonella enterica subsp. en... gi\|213426004 - gi\|213426004\|ref\|ZP_03358754.1\| hypothetical protein SentesTyphi_10349 [Salmonella enterica subsp. e... gi\|213161998 - gi\|213161998\|ref\|ZP_03347708.1\| hypothetical protein Salmoneentericaenterica_19157 [Salmonella enter... gi\|16764781, gi\|... - gi\|16764781\|ref\|NP_460396.1\| hypothetical protein STM1433 [Salmonella typhimurium LT2], gi\|16419953\|... gi\|224468585, gi... - gi\|224584058\|ref\|YP_002637856.1\| hypothetical protein SPC_2298 [Salmonella enterica subsp. enterica ... gi\|29137388, gi\|... - gi\|29141760\|ref\|NP_805102.1\| hypothetical protein t1301 [Salmonella enterica subsp. enterica serovar... gi\|214000296 - gi\|214000296\|ref\|ZP_03411031.1\| hypothetical protein Salmonellentericaenterica_06486 [Salmonella ent... gi\|213855188 - gi\|213855188\|ref\|ZP_03383428.1\| hypothetical protein SentesT_14372 [Salmonella enterica subsp. enter... gi\|16502776, gi\|... - gi\|25318360\|pir\|\|AE0695 conserved hypothetical protein STY1689 [imported] - Salmonella enterica subs... gi\|213649692 - gi\|213649692\|ref\|ZP_03379745.1\| hypothetical protein SentesTy_21810 [Salmonella enterica subsp. ente...	5.0E-33	[2..114]	[3..115]
gi\|53732469 - gi\|53732469\|ref\|ZP_00154429.2\| COG0278: Glutaredoxin-related protein [Haemophilus influenzae R2846]	7.0E-33	[1..107]	[1..107]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTIDKIQRQ ITENPILLYM KGSPKLPNCG FSAQAVQALS ACGERFAYVD ILQNPDIRAE  60
   61 LPKYANWPTF PQLWVDGELV GGCDILMEMY QRGELQTLLK ETADKYRSQE DQPAAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1ykaA
Description:	Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits