YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22126055, gi\|...
Organism:	Yersinia pestis KIM10+
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22126055, gi|....

Description	E-value	Query Range	Subject Range
gi\|213580824 - gi\|213580824\|ref\|ZP_03362650.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|213427975 - gi\|213427975\|ref\|ZP_03360725.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|213418192 - gi\|213418192\|ref\|ZP_03351258.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|207857213, gi... - gi\|207857213\|ref\|YP_002243864.1\| putative outer membrane protein [Salmonella enterica subsp. enteric... gi\|214003040 - gi\|214003040\|ref\|ZP_03413775.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|213974793 - gi\|213974793\|ref\|ZP_03402052.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|213646213 - gi\|213646213\|ref\|ZP_03376266.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|213613244 - gi\|213613244\|ref\|ZP_03371070.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|29141633, gi\|... - gi\|29141633\|ref\|NP_804975.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se... gi\|205341582, gi... - gi\|205341582\|gb\|EDZ28346.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serovar We... gi\|16760608 - gi\|16760608\|ref\|NP_456225.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se... gi\|205347304, gi... - gi\|205347304\|gb\|EDZ33935.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serovar Ha... gi\|16502904, gi\|... - gi\|25325846\|pir\|\|AC0712 probable outer membrane protein STY1830 [imported] - Salmonella enterica sub... gi\|205336793, gi... - gi\|205336793\|gb\|EDZ23557.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serovar He... gi\|16419803, gi\|... - gi\|16764637\|ref\|NP_460252.1\| MltA-interacting protein A [Salmonella typhimurium LT2], gi\|16419803\|gb... gi\|205329758, gi... - gi\|205329758\|gb\|EDZ16522.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serovar 4,... gi\|197936956, gi... - gi\|198242440\|ref\|YP_002215849.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serov... gi\|197265083, gi... - gi\|197265083\|ref\|ZP_03165157.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serova... gi\|197251413, gi... - gi\|197251413\|ref\|YP_002146753.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serov... gi\|194406172, gi... - gi\|194447868\|ref\|YP_002045292.1\| MltA-interacting protein [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=mipA] [protein=MltA-interacting protein A] [protein_id=YP_005237135.1] [location=1374166..1374... gi\|161363678, gi... - gi\|161614314\|ref\|YP_001588279.1\| hypothetical protein SPAB_02060 [Salmonella enterica subsp. enteric... gi\|238910897 - gi\|238910897\|ref\|ZP_04654734.1\| putative outer membrane protein [Salmonella enterica subsp. enterica...	1.0E-69	[8..255]	[1..248]
gi\|197094127, gi... - gi\|197362650\|ref\|YP_002142287.1\| putative outer membrane protein [Salmonella enterica subsp. enteric... gi\|56127985, gi\|... - gi\|56413728\|ref\|YP_150803.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se...	2.0E-69	[8..255]	[1..248]
gi\|62127501, gi\|... - gi\|62179868\|ref\|YP_216285.1\| scaffolding protein for murein-synthesizing holoenzyme [Salmonella ente...	4.0E-69	[8..255]	[1..248]
gi\|75241343, gi\|... - gi\|75241343\|ref\|ZP_00725194.1\| COG3713: Outer membrane protein V [Escherichia coli F11], gi\|19117165... gi\|110641904, gi... - gi\|110641904\|ref\|YP_669634.1\| MltA-interacting protein precursor [Escherichia coli 536], gi\|11034349...	2.0E-68	[8..255]	[1..248]
gi\|218705280, gi... - gi\|218705280\|ref\|YP_002412799.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|218369636, gi... - gi\|218699650\|ref\|YP_002407279.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|30062956, gi\|... - gi\|30062956\|ref\|NP_837127.1\| hypothetical protein S1556 [Shigella flexneri 2a str. 2457T], gi\|300412... EG13492 - scaffolding protein for murein synthesizing machinery / MltA-interacting protein; outer membrane; bi... MIPA_SHIFL - MltA-interacting protein OS=Shigella flexneri GN=mipA PE=3 SV=1 gi\|24051757, gi\|... - gi\|24112822\|ref\|NP_707332.1\| hypothetical protein SF1441 [Shigella flexneri 2a str. 301], gi\|2405175... gi\|1742900, gi\|8... - gi\|89108621\|ref\|AP_002401.1\| scaffolding protein for murein synthesizing machinery [Escherichia coli... gi\|91210999, gi\|... - gi\|91210999\|ref\|YP_540985.1\| hypothetical protein UTI89_C1978 [Escherichia coli UTI89], gi\|91072573\|... gi\|110614959, gi... - gi\|110805411\|ref\|YP_688931.1\| hypothetical protein SFV_1433 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|193066591, gi... - gi\|75255303\|ref\|ZP_00727136.1\| COG3713: Outer membrane protein V [Escherichia coli E22], gi\|19306659... gi\|188492141, gi... - gi\|75513720\|ref\|ZP_00736096.1\| COG3713: Outer membrane protein V [Escherichia coli 53638], gi\|188492... gi\|115513076, gi... - gi\|117623952\|ref\|YP_852865.1\| MltA-interacting protein precursor [Escherichia coli APEC O1], gi\|1155... gi\|191168988, gi... - gi\|75227733\|ref\|ZP_00714465.1\| COG3713: Outer membrane protein V [Escherichia coli B7A], gi\|19116898... gi\|124498124, gi... - gi\|124532173\|ref\|ZP_01702136.1\| MltA-interacting MipA family protein [Escherichia coli B], gi\|124498... gi\|192957759, gi... - gi\|75236751\|ref\|ZP_00720822.1\| COG3713: Outer membrane protein V [Escherichia coli E110019], gi\|1930... gi\|82543819, gi\|... - gi\|82543819\|ref\|YP_407766.1\| hypothetical protein SBO_1311 [Shigella boydii Sb227], gi\|81245230\|gb\|A... gi\|73855384, gi\|... - gi\|74311907\|ref\|YP_310326.1\| hypothetical protein SSON_1380 [Shigella sonnei Ss046], gi\|73855384\|gb\|... gi\|81240914, gi\|... - gi\|82776766\|ref\|YP_403115.1\| hypothetical protein SDY_1485 [Shigella dysenteriae Sd197], gi\|81240914... gi\|194439631, gi... - gi\|83584968\|ref\|ZP_00923623.1\| COG3713: Outer membrane protein V [Escherichia coli 101-1], gi\|194439... EG13492 - scaffolding protein for murein synthesizing machinery / MltA-interacting protein; outer membrane; bi... gi\|157066923, gi... - gi\|75195850\|ref\|ZP_00705920.1\| COG3713: Outer membrane protein V [Escherichia coli HS], gi\|157161243... gi\|75210259, gi\|... - gi\|75210259\|ref\|ZP_00710427.1\| COG3713: Outer membrane protein V [Escherichia coli B171], gi\|1944285... gi\|237705734, gi... - gi\|237705734\|ref\|ZP_04536215.1\| outer membrane protein [Escherichia sp. 3_2_53FAA], gi\|226900491\|gb\|... gi\|187731802, gi... - gi\|75177297\|ref\|ZP_00697386.1\| COG3713: Outer membrane protein V [Shigella boydii BS512], gi\|1877318... gi\|238900996, gi... - gi\|238900996\|ref\|YP_002926792.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|75190813, gi\|... - gi\|75190813\|ref\|ZP_00704080.1\| COG3713: Outer membrane protein V [Escherichia coli E24377A], gi\|1571... gi\|251785230, gi... - gi\|251785230\|ref\|YP_002999534.1\| hypothetical protein B21_01739 [Escherichia coli BL21], gi\|24237750... gi\|170019872, gi... - gi\|170019872\|ref\|YP_001724826.1\| MltA-interacting MipA family protein [Escherichia coli ATCC 8739], ... gi\|253977935, gi... - gi\|254288628\|ref\|YP_003054376.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|253973741, gi... - gi\|254161840\|ref\|YP_003044948.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|170682310, gi... - gi\|170682310\|ref\|YP_001743467.1\| MltA-interacting protein MipA [Escherichia coli SMS-3-5], gi\|170520... gi\|170081438, gi... - gi\|170081438\|ref\|YP_001730758.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|218554350, gi... - gi\|218554350\|ref\|YP_002387263.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|209919144, gi... - gi\|209919144\|ref\|YP_002293228.1\| scaffolding protein for murein-synthesizing holoenzyme [Escherichia... gi\|218695341, gi... - gi\|218695341\|ref\|YP_002403008.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|218558650, gi... - gi\|218558650\|ref\|YP_002391563.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... MIPA_ECOLI - MltA-interacting protein precursor - Escherichia coli	3.0E-68	[8..255]	[1..248]
gi\|194433465, gi... - gi\|83569610\|ref\|ZP_00921061.1\| COG3713: Outer membrane protein V [Shigella dysenteriae 1012], gi\|194...	3.0E-68	[8..255]	[1..248]
gi\|254592804, gi... - gi\|254793404\|ref\|YP_003078241.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|15831745, gi\|... - gi\|15831745\|ref\|NP_310518.1\| putative scaffolding protein in the formation of a murein-synthesizing ... gi\|217328994, gi... - gi\|217328994\|ref\|ZP_03445075.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. TW14588... gi\|209162024, gi... - gi\|209400624\|ref\|YP_002270857.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4115... gi\|25325844, gi\|... - pir\|\|G85788 hypothetical protein yeaF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12515816, gi\|... - gi\|15802196\|ref\|NP_288218.1\| hypothetical protein Z2822 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|15831745, gi\|... - gi\|15831745\|ref\|NP_310518.1\| putative scaffolding protein in the formation of a murein-synthesizing ... gi\|189376756, gi... - gi\|189376756\|gb\|EDU95172.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC508], gi\|... gi\|189372026, gi... - gi\|189372026\|gb\|EDU90442.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC869], gi\|... gi\|189000331, gi... - gi\|189000331\|gb\|EDU69317.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4076], gi... gi\|187769383, gi... - gi\|187769383\|gb\|EDU33227.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4196], gi... gi\|208818624, gi... - gi\|208818624\|ref\|ZP_03258944.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4042]... gi\|208731364, gi... - gi\|208817021\|ref\|ZP_03258141.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4045]... gi\|208810214, gi... - gi\|208810214\|ref\|ZP_03252090.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4206]... gi\|195937470 - gi\|195937470\|ref\|ZP_03082852.1\| putative scaffolding protein in the formation of a murein-synthesizi... gi\|189360395, gi... - gi\|189360395\|gb\|EDU78814.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4486], gi... gi\|189365704, gi... - gi\|189365704\|gb\|EDU84120.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4501], gi... gi\|168758087, gi... - gi\|189355032\|gb\|EDU73451.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4401], gi... gi\|188016313, gi... - gi\|188016313\|gb\|EDU54435.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4113], gi...	1.0E-67	[8..255]	[1..248]
gi\|26248041, gi\|... - gi\|26248041\|ref\|NP_754081.1\| MltA-interacting protein precursor [Escherichia coli CFT073], gi\|261084...	2.0E-67	[8..255]	[1..248]
gi\|37526451, gi\|... - gi\|37526451\|ref\|NP_929795.1\| MltA-interacting protein precursor [Photorhabdus luminescens subsp. lau...	4.0E-66	[8..255]	[2..250]
gi\|77977684 - gi\|77977684\|ref\|ZP_00833126.1\| COG3713: Outer membrane protein V [Yersinia intermedia ATCC 29909]	1.0E-65	[25..256]	[1..232]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKDRKEMNQ IKTLAALTVA LAVCMPTANA GNWSLGASAL VSPDPYRGKN DRVYPVPVVS  60
   61 YESDNFYFRT LAAGYYLWND SSNRLSIDAF YSPLHFKPGD SDDQQMKQLN RRRSTMMAGM 120
  121 SYSHIEDWGT LRAMFAGDIL DNSDGFVGDL AYLYRFSIDS WTLTPGVGVS WSSKDQNSYY 180
  181 YGVSRGESAR SGLAEYNPSD SWSPYLELSA NYNINPNWNA FFTGRYIRLA NEVKNSPMVD 240
  241 QSYTGVLWTG VTYTFR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.7
Match:	2f1tA
Description:	Outer membrane protein OmpW
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits