YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115347385, gi...
Organism:	Yersinia pestis CO92
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115347385, gi....

Description	E-value	Query Range	Subject Range
gi\|89105578 - gi\|89105578\|ref\|ZP_01178095.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..371]	[31..401]
gi\|77635911 - gi\|77635911\|ref\|ZP_00797990.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..371]	[21..391]
gi\|77629499, gi\|... - gi\|77629499\|ref\|ZP_00792085.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..371]	[21..391]
gi\|238720208, gi... - gi\|77963649\|ref\|ZP_00827457.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..371]	[1..371]
gi\|238789081, gi... - gi\|77972866\|ref\|ZP_00828422.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..369]	[1..369]
gi\|77959452 - gi\|77959452\|ref\|ZP_00823472.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..371]	[20..390]
gi\|238791830, gi... - gi\|77980028\|ref\|ZP_00835443.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..370]	[1..370]
gi\|75209213, gi\|... - gi\|75209213\|ref\|ZP_00709460.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..368]	[1..367]
MNMA_PHOLL - tRNA-specific 2-thiouridylase MnmA OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / ... MNMA_PHOLL - tRNA-specific 2-thiouridylase mnmA OS=Photorhabdus luminescens subsp. laumondii GN=mnmA PE=3 SV=1	0.0	[1..367]	[1..367]
gi\|75511661, gi\|... - gi\|75511661\|ref\|ZP_00734308.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	0.0	[1..368]	[1..367]

Back

Predicted Domain #1

Region A:
Residues: [1-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNSQKKVI VGMSGGVDSS VSAYLLQQQG YQVAGLFMKN WEEDDDEEYC SAATDLADAQ  60
   61 AVCDKLGMEL HTVNFAAEYW DNVFELFLAE YKAGRTPNPD ILCNKEIKFK AFLEFAAEDL 120
  121 GADYIATGHY VRRQDVDGKS RLLRGLDGNK DQSYFLYTLS HEQIAQSLFP VGELEKPEVR 180
  181 RIAEQLDLVT AKKKDSTGIC FIGERKFRDF LGRYLPAQPG PIMTVDGQLV GKHQGLMYHT 240
  241 LGQRKGLGIG GTKEGGDDPW YVVDKDLDSN TLLVAQGHEH PRLMSVGLVA QQLHWVDRQP 300
  301 VTAPFRCVVK TRYRQQDIPC TVTPLDDERV DVRFDDPVAA VTPGQSAVFY QGEICLGGGI 360
  361 IEQRYPLTNP A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.0
Match:	2derA
Description:	No description for 2derA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits