YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25509516
Organism:	Yersinia pestis
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25509516.

Description	E-value	Query Range	Subject Range
gi\|87200830, gi\|... - gi\|87200830\|ref\|YP_498087.1\| hypothetical protein Saro_2817 [Novosphingobium aromaticivorans DSM 124...	7.0E-75	[6..229]	[23..246]
gi\|84712740, gi\|... - gi\|84712740\|ref\|ZP_01020620.1\| possible acyl transferase [Polaromonas naphthalenivorans CJ2], gi\|846...	2.0E-73	[4..230]	[3..229]
gi\|72603506, gi\|... - gi\|89899151\|ref\|YP_521622.1\| hypothetical protein Rfer_0337 [Rhodoferax ferrireducens T118], gi\|8934...	2.0E-70	[4..230]	[1..227]
gi\|84668630, gi\|... - gi\|84683887\|ref\|ZP_01011790.1\| hypothetical protein RB2654_20978 [Rhodobacterales bacterium HTCC2654...	2.0E-70	[5..229]	[6..230]
gi\|19918963 - gi\|19918963\|dbj\|BAB88738.1\| 4-carboxy-4-hydroxy-2-oxoadipate aldolase [Sphingomonas paucimobilis]	2.0E-70	[8..229]	[7..228]
gi\|15074699 - gi\|15074699\|emb\|CAC46344.1\| Demethylmenaquinone methyltransferase [Sinorhizobium meliloti 1021] gi\|15965518 - gi\|15965518\|ref\|NP_385871.1\| hypothetical protein SMc00502 [Sinorhizobium meliloti 1021]	8.0E-70	[8..230]	[2..224]
gi\|112821458, gi... - gi\|113473778\|ref\|YP_718041.1\| hypothetical protein pCAR3_100 [Sphingomonas sp. KA1], gi\|112821458\|db...	1.0E-68	[5..229]	[5..229]
gi\|116252598, gi... - gi\|116252598\|ref\|YP_768436.1\| hypothetical protein RL2851 [Rhizobium leguminosarum bv. viciae 3841],...	8.0E-68	[8..229]	[2..223]
gi\|90415599, gi\|... - gi\|90415599\|ref\|ZP_01223533.1\| hypothetical protein GB2207_09786 [marine gamma proteobacterium HTCC2... gi\|90415599\|ref\|... - hypothetical protein GB2207_09786 [marine gamma proteobacterium HTCC2207]	1.0E-67	[9..230]	[5..226]
gi\|88777417, gi\|... - gi\|88799837\|ref\|ZP_01115410.1\| hypothetical protein MED297_02905 [Reinekea sp. MED297], gi\|88777417\|...	1.0E-67	[8..228]	[2..222]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVNMKGVV VTNIERAELA LLQRFAEYGV ATVHEAQLRQ GLLDERIKPI QQGRCIAGNA  60
   61 VTVLVTPGDN WMFHVAVEQC QPGDVLLVAP TSECHDGFFG DLLATSLLAR GVVALVGDIG 120
  121 IRDSQTLREM NFPVWSRAVW AQGTVKASLG SVNVPVICAG QLVNPGDIVV ADDDGVVIVP 180
  181 REQATAIADA AQTRVDLETS KRQRLANGEL GLDIYQMRAP LAKKGLRYVN SLNALKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	2c5qA
Description:	Crystal structure of yeast YER010Cp
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits