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View Structure Prediction Details

Protein: gi|25509516
Organism: Yersinia pestis
Length: 237 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25509516.

Description E-value Query
Range
Subject
Range
gi|87200830, gi|... - gi|87200830|ref|YP_498087.1| hypothetical protein Saro_2817 [Novosphingobium aromaticivorans DSM 124...
7.0E-75 [6..229] [23..246]
gi|84712740, gi|... - gi|84712740|ref|ZP_01020620.1| possible acyl transferase [Polaromonas naphthalenivorans CJ2], gi|846...
2.0E-73 [4..230] [3..229]
gi|72603506, gi|... - gi|89899151|ref|YP_521622.1| hypothetical protein Rfer_0337 [Rhodoferax ferrireducens T118], gi|8934...
2.0E-70 [4..230] [1..227]
gi|84668630, gi|... - gi|84683887|ref|ZP_01011790.1| hypothetical protein RB2654_20978 [Rhodobacterales bacterium HTCC2654...
2.0E-70 [5..229] [6..230]
gi|19918963 - gi|19918963|dbj|BAB88738.1| 4-carboxy-4-hydroxy-2-oxoadipate aldolase [Sphingomonas paucimobilis]
2.0E-70 [8..229] [7..228]
gi|15074699 - gi|15074699|emb|CAC46344.1| Demethylmenaquinone methyltransferase [Sinorhizobium meliloti 1021]
gi|15965518 - gi|15965518|ref|NP_385871.1| hypothetical protein SMc00502 [Sinorhizobium meliloti 1021]
8.0E-70 [8..230] [2..224]
gi|112821458, gi... - gi|113473778|ref|YP_718041.1| hypothetical protein pCAR3_100 [Sphingomonas sp. KA1], gi|112821458|db...
1.0E-68 [5..229] [5..229]
gi|116252598, gi... - gi|116252598|ref|YP_768436.1| hypothetical protein RL2851 [Rhizobium leguminosarum bv. viciae 3841],...
8.0E-68 [8..229] [2..223]
gi|90415599, gi|... - gi|90415599|ref|ZP_01223533.1| hypothetical protein GB2207_09786 [marine gamma proteobacterium HTCC2...
gi|90415599|ref|... - hypothetical protein GB2207_09786 [marine gamma proteobacterium HTCC2207]
1.0E-67 [9..230] [5..226]
gi|88777417, gi|... - gi|88799837|ref|ZP_01115410.1| hypothetical protein MED297_02905 [Reinekea sp. MED297], gi|88777417|...
1.0E-67 [8..228] [2..222]

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Predicted Domain #1
Region A:
Residues: [1-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVNMKGVV VTNIERAELA LLQRFAEYGV ATVHEAQLRQ GLLDERIKPI QQGRCIAGNA  60
   61 VTVLVTPGDN WMFHVAVEQC QPGDVLLVAP TSECHDGFFG DLLATSLLAR GVVALVGDIG 120
  121 IRDSQTLREM NFPVWSRAVW AQGTVKASLG SVNVPVICAG QLVNPGDIVV ADDDGVVIVP 180
  181 REQATAIADA AQTRVDLETS KRQRLANGEL GLDIYQMRAP LAKKGLRYVN SLNALKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 2c5qA
Description: Crystal structure of yeast YER010Cp
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle