YRC Public Data Repository - Protein Structure Prediction

Protein:	SSPA_ECOLI
Organism:	Escherichia coli
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSPA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|17385642 - gi\|17385642\|dbj\|BAB32446.2\| glutathione S-transferase [Matricaria chamomilla]	182.0	[0..7]	[209..2]
gi\|2052029, gi\|7... - pir\|\|T07156 probable glutathione transferase (EC 2.5.1.18) - soybean, gi\|2052029\|emb\|CAA71784.1\| glu...	180.0	[0..8]	[209..2]
gi\|74313759, gi\|... - gi\|74313759\|ref\|YP_312178.1\| stringent starvation protein A [Shigella sonnei Ss046], gi\|73857236\|gb\|...	178.0	[0..1]	[212..1]
gi\|75209666, gi\|... - gi\|75209666\|ref\|ZP_00709878.1\| COG0625: Glutathione S-transferase [Escherichia coli B171], gi\|194429...	178.0	[0..1]	[212..1]
gi\|16504406, gi\|... - gi\|25301490\|pir\|\|AE0908 stringent starvation protein A [imported] - Salmonella enterica subsp. enter... gi\|213647311 - gi\|213647311\|ref\|ZP_03377364.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ... gi\|214002727 - gi\|214002727\|ref\|ZP_03413462.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ... gi\|29143592, gi\|... - gi\|29143592\|ref\|NP_806934.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ser... gi\|16762103 - gi\|16762103\|ref\|NP_457720.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ser... gi\|213424385 - gi\|213424385\|ref\|ZP_03357208.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ... gi\|213583253 - gi\|213583253\|ref\|ZP_03365079.1\| stringent starvation protein A [Salmonella enterica subsp. enterica ...	178.0	[0..1]	[211..1]
gi\|81242685, gi\|... - gi\|82778537\|ref\|YP_404886.1\| stringent starvation protein A [Shigella dysenteriae Sd197], gi\|8124268...	177.0	[0..1]	[212..1]
gi\|49609794, gi\|... - gi\|50119268\|ref\|YP_048435.1\| stringent starvation protein A [Pectobacterium atrosepticum SCRI1043], ...	177.0	[0..1]	[209..1]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAANKRSV MTLFSGPTDI YSHQVRIVLA EKGVSFEIEH VEKDNPPQDL IDLNPNQSVP  60
   61 TLVDRELTLW ESRIIMEYLD ERFPHPPLMP VYPVARGESR LYMHRIEKDW YTLMNTIING 120
  121 SASEADAARK QLREELLAIA PVFGQKPYFL SDEFSLVDCY LAPLLWRLPQ LGIEFSGPGA 180
  181 KELKGYMTRV FERDSFLASL TEAEREMRLG RS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1yy7A
Description:	Crystal structure of stringent starvation protein A (SspA), an RNA polymerase-associated transcription factor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits