YRC Public Data Repository - Protein Structure Prediction

Protein:	RL27_ECOLI
Organism:	Escherichia coli
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL27_ECOLI.

Description	E-value	Query Range	Subject Range
RL27_LEGPA - 50S ribosomal protein L27 OS=Legionella pneumophila (strain Paris) GN=rpmA PE=3 SV=1 RL27_LEGPL - 50S ribosomal protein L27 OS=Legionella pneumophila (strain Lens) GN=rpmA PE=3 SV=1 RL27_LEGPH - 50S ribosomal protein L27 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC... RL27_LEGPC - 50S ribosomal protein L27 OS=Legionella pneumophila (strain Corby) GN=rpmA PE=3 SV=1	149.0	[0..1]	[85..1]
gi\|238793007, gi... - gi\|77977595\|ref\|ZP_00833039.1\| COG0211: Ribosomal protein L27 [Yersinia intermedia ATCC 29909], gi\|2...	148.0	[0..1]	[85..1]
gi\|238718564, gi... - gi\|77961854\|ref\|ZP_00825683.1\| COG0211: Ribosomal protein L27 [Yersinia mollaretii ATCC 43969], gi\|2...	147.0	[0..1]	[85..1]
gi\|238715585, gi... - gi\|77958776\|ref\|ZP_00822804.1\| COG0211: Ribosomal protein L27 [Yersinia bercovieri ATCC 43970], gi\|2...	146.0	[0..1]	[85..1]
gi\|227113760 - gi\|227113760\|ref\|ZP_03827416.1\| 50S ribosomal protein L27 [Pectobacterium carotovorum subsp. brasili... RL27_ERWCT - 50S ribosomal protein L27 OS=Erwinia carotovora subsp. atroseptica GN=rpmA PE=3 SV=1 gi\|227328596 - gi\|227328596\|ref\|ZP_03832620.1\| 50S ribosomal protein L27 [Pectobacterium carotovorum subsp. carotov... gi\|255057112, gi... - gi\|255057112\|ref\|ZP_05309299.1\| ribosomal protein L27 [Pectobacterium wasabiae WPP163], gi\|254987072... RL27_PECAS - 50S ribosomal protein L27 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rpmA P...	146.0	[0..1]	[85..1]
RL27_PHOLL - 50S ribosomal protein L27 OS=Photorhabdus luminescens subsp. laumondii GN=rpmA PE=3 SV=1 RL27_PHOLL - 50S ribosomal protein L27 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...	146.0	[0..1]	[85..1]
RL27_VIBVY - 50S ribosomal protein L27 OS=Vibrio vulnificus (strain YJ016) GN=rpmA PE=3 SV=1 RL27_VIBVU - 50S ribosomal protein L27 OS=Vibrio vulnificus (strain CMCP6) GN=rpmA PE=3 SV=1 RL27_VIBVU - 50S ribosomal protein L27 OS=Vibrio vulnificus GN=rpmA PE=3 SV=1	146.0	[0..1]	[85..1]
gi\|62257455 - gi\|62257455\|gb\|AAX77717.1\| unknown protein [synthetic construct]	146.0	[0..1]	[83..27]
RL27_YERPS - 50S ribosomal protein L27 OS=Yersinia pseudotuberculosis GN=rpmA PE=3 SV=1 RL27_YERPE - 50S ribosomal protein L27 OS=Yersinia pestis GN=rpmA PE=3 SV=1 gi\|238699867, gi... - gi\|238761753\|ref\|ZP_04622727.1\| 50S ribosomal protein L27 [Yersinia kristensenii ATCC 33638], gi\|238... gi\|238705348, gi... - gi\|238756418\|ref\|ZP_04617727.1\| 50S ribosomal protein L27 [Yersinia ruckeri ATCC 29473], gi\|23870534... gi\|238750112, gi... - gi\|238750112\|ref\|ZP_04611615.1\| 50S ribosomal protein L27 [Yersinia rohdei ATCC 43380], gi\|238711656... gi\|229687220, gi... - gi\|229899728\|ref\|ZP_04514869.1\| 50S ribosomal subunit protein L27 [Yersinia pestis biovar Orientalis... gi\|238724367, gi... - gi\|77974004\|ref\|ZP_00829547.1\| COG0211: Ribosomal protein L27 [Yersinia frederiksenii ATCC 33641], g... gi\|229700431, gi... - gi\|229896653\|ref\|ZP_04511820.1\| 50S ribosomal subunit protein L27 [Yersinia pestis Pestoides A], gi\|... RL27_YERPG - 50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rpmA PE=3 SV=1 gi\|229695530, gi... - gi\|229839164\|ref\|ZP_04459323.1\| 50S ribosomal subunit protein L27 [Yersinia pestis biovar Orientalis... RL27_YERP3 - 50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpmA PE=... RL27_YERPY - 50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpmA PE=3 SV... RL27_YERPB - 50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpmA PE=3 SV=... gi\|165919849, gi... - gi\|165928162\|ref\|ZP_02223994.1\| ribosomal protein L27 [Yersinia pestis biovar Orientalis str. F19910... gi\|165989783, gi... - gi\|166011399\|ref\|ZP_02232297.1\| ribosomal protein L27 [Yersinia pestis biovar Antiqua str. E1979001]... gi\|166204836, gi... - gi\|166214041\|ref\|ZP_02240076.1\| ribosomal protein L27 [Yersinia pestis biovar Antiqua str. B42003004... gi\|167401295, gi... - gi\|167401295\|ref\|ZP_02306795.1\| ribosomal protein L27 [Yersinia pestis biovar Antiqua str. UG05-0454... gi\|166961598, gi... - gi\|167420792\|ref\|ZP_02312545.1\| ribosomal protein L27 [Yersinia pestis biovar Orientalis str. MG05-1... gi\|167057320, gi... - gi\|167423150\|ref\|ZP_02314903.1\| ribosomal protein L27 [Yersinia pestis biovar Mediaevalis str. K1973... gi\|45435283, gi\|... - gi\|45440426\|ref\|NP_991965.1\| 50S ribosomal protein L27 [Yersinia pestis biovar Microtus str. 91001],... gi\|22124587, gi\|... - gi\|22124587\|ref\|NP_668010.1\| 50S ribosomal protein L27 [Yersinia pestis KIM], gi\|21957389\|gb\|AAM8426... gi\|115349136, gi... - gi\|218930525\|ref\|YP_002348400.1\| 50S ribosomal protein L27 [Yersinia pestis CO92], gi\|16123657\|ref\|N... RL27_YERPS - 50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rpmA PE=3 SV... gi\|165937424, gi... - gi\|89104081\|ref\|ZP_01176635.1\| COG0211: Ribosomal protein L27 [Yersinia pestis biovar Orientalis str... RL27_YERPA - 50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpmA PE=3 SV=1 RL27_YERPN - 50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpmA PE=3 SV=1 gi\|153997288, gi... - gi\|153997288\|ref\|ZP_02022388.1\| 50S ribosomal protein L27 [Yersinia pestis CA88-4125], gi\|149288925\|... RL27_YERPP - 50S ribosomal protein L27 OS=Yersinia pestis (strain Pestoides F) GN=rpmA PE=3 SV=1	146.0	[0..1]	[85..1]
RL27_SODGM - 50S ribosomal protein L27 OS=Sodalis glossinidius (strain morsitans) GN=rpmA PE=3 SV=1	145.0	[0..1]	[85..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKKAGGST RNGRDSEAKR LGVKRFGGES VLAGSIIVRQ RGTKFHAGAN VGCGRDHTLF  60
   61 AKADGKVKFE VKGPKNRKFI SIEAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1vs6W
Description:	No description for 1vs6W was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits