YRC Public Data Repository - Protein Structure Prediction

Protein:	RL19_ECOLI
Organism:	Escherichia coli
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL19_ECOLI.

Description	E-value	Query Range	Subject Range
RL19_GEOSE - 50S ribosomal protein L19 OS=Geobacillus stearothermophilus GN=rplS PE=3 SV=1	182.0	[0..1]	[114..1]
RL19_VIBCM - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplS PE=3 SV=1 gi\|75814057, gi\|... - gi\|75814057\|ref\|ZP_00744708.1\| COG0335: Ribosomal protein L19 [Vibrio cholerae V52], gi\|121730267\|re... gi\|229355920, gi... - gi\|229507175\|ref\|ZP_04396681.1\| LSU ribosomal protein L19p [Vibrio cholerae BX 330286], gi\|229355920... gi\|229509160, gi... - gi\|229509160\|ref\|ZP_04398645.1\| LSU ribosomal protein L19p [Vibrio cholerae B33], gi\|229353732\|gb\|EE... gi\|229512833, gi... - gi\|229512833\|ref\|ZP_04402300.1\| LSU ribosomal protein L19p [Vibrio cholerae TMA 21], gi\|229350082\|gb... gi\|229519630, gi... - gi\|229519630\|ref\|ZP_04409073.1\| LSU ribosomal protein L19p [Vibrio cholerae RC9], gi\|229344319\|gb\|EE... gi\|229520860, gi... - gi\|229520860\|ref\|ZP_04410282.1\| LSU ribosomal protein L19p [Vibrio cholerae TM 11079-80], gi\|2293420... gi\|197750586, gi... - gi\|254292063\|ref\|ZP_04962839.1\| ribosomal protein L19 [Vibrio cholerae AM-19226], gi\|197750586\|ref\|Y... gi\|229338805, gi... - gi\|229525224\|ref\|ZP_04414629.1\| LSU ribosomal protein L19p [Vibrio cholerae bv. albensis VL426], gi\|... gi\|148874301, gi... - gi\|153830241\|ref\|ZP_01982908.1\| ribosomal protein L19 [Vibrio cholerae 623-39], gi\|148874301\|gb\|EDL7... gi\|229530377, gi... - gi\|229530377\|ref\|ZP_04419765.1\| LSU ribosomal protein L19p [Vibrio cholerae 12129(1)], gi\|229332150\|... gi\|229368802, gi... - gi\|229606147\|ref\|YP_002876795.1\| LSU ribosomal protein L19p [Vibrio cholerae MJ-1236], gi\|229368802\|... RL19_VIBCH - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... RL19_VIBCH - 50S ribosomal protein L19 OS=Vibrio cholerae GN=rplS PE=3 SV=3 gi\|153216310, gi... - gi\|153216310\|ref\|ZP_01950400.1\| ribosomal protein L19 [Vibrio cholerae 1587], gi\|124114352\|gb\|EAY331... gi\|124117868, gi... - gi\|153224048\|ref\|ZP_01954193.1\| ribosomal protein L19 [Vibrio cholerae MAK 757], gi\|124117868\|gb\|EAY... gi\|124120841, gi... - gi\|153803623\|ref\|ZP_01958209.1\| ribosomal protein L19 [Vibrio cholerae MZO-3], gi\|124120841\|gb\|EAY39... gi\|153820582, gi... - gi\|153820582\|ref\|ZP_01973249.1\| ribosomal protein L19 [Vibrio cholerae NCTC 8457], gi\|126508874\|gb\|E... gi\|153827343, gi... - gi\|153827343\|ref\|ZP_01980010.1\| ribosomal protein L19 [Vibrio cholerae MZO-2], gi\|149738738\|gb\|EDM53... RL19_VIBC3 - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... gi\|75828608, gi\|... - gi\|75828608\|ref\|ZP_00757979.1\| COG0335: Ribosomal protein L19 [Vibrio cholerae MO10], gi\|254850801\|r...	182.0	[0..1]	[114..1]
gi\|87282734, gi\|... - gi\|87302851\|ref\|ZP_01085662.1\| 50S ribosomal protein L19 [Synechococcus sp. WH 5701], gi\|87282734\|gb...	179.0	[0..2]	[115..57]
RL19_VIBCB - 50S ribosomal protein L19 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rplS PE=3 SV=1 gi\|91228776, gi\|... - gi\|91228776\|ref\|ZP_01262686.1\| 50S ribosomal protein L19 [Vibrio alginolyticus 12G01], gi\|91187683\|g... gi\|148865851, gi... - gi\|153835827\|ref\|ZP_01988494.1\| ribosomal protein L19 [Vibrio harveyi HY01], gi\|148865851\|gb\|EDL6681... gi\|116183751, gi... - gi\|75854260\|ref\|ZP_00761965.1\| COG0335: Ribosomal protein L19 [Vibrio sp. Ex25], gi\|116183751\|ref\|ZP...	178.0	[0..1]	[114..1]
gi\|213027194 - gi\|213027194\|ref\|ZP_03341641.1\| 50S ribosomal protein L19 [Salmonella enterica subsp. enterica serov... gi\|213161438 - gi\|213161438\|ref\|ZP_03347148.1\| 50S ribosomal protein L19 [Salmonella enterica subsp. enterica serov... gi\|213424866 - gi\|213424866\|ref\|ZP_03357616.1\| 50S ribosomal protein L19 [Salmonella enterica subsp. enterica serov... gi\|213583983 - gi\|213583983\|ref\|ZP_03365809.1\| 50S ribosomal protein L19 [Salmonella enterica subsp. enterica serov... gi\|199604485, gi... - gi\|200387387\|ref\|ZP_03213999.1\| ribosomal protein L19 [Salmonella enterica subsp. enterica serovar V... gi\|204929689, gi... - gi\|204929689\|ref\|ZP_03220763.1\| ribosomal protein L19 [Salmonella enterica subsp. enterica serovar J... RL19_SALG2 - 50S ribosomal protein L19 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplS PE=3 SV=1 RL19_SALEP - 50S ribosomal protein L19 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplS PE=3 SV=1 RL19_SALA4 - 50S ribosomal protein L19 OS=Salmonella agona (strain SL483) GN=rplS PE=3 SV=1 gi\|197261688, gi... - gi\|197261688\|ref\|ZP_03161762.1\| ribosomal protein L19 [Salmonella enterica subsp. enterica serovar S... RL19_SALPK - 50S ribosomal protein L19 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplS PE=3 SV=1 RL19_SALDC - 50S ribosomal protein L19 OS=Salmonella dublin (strain CT_02021853) GN=rplS PE=3 SV=1 RL19_SALNS - 50S ribosomal protein L19 OS=Salmonella newport (strain SL254) GN=rplS PE=3 SV=1 RL19_SALHS - 50S ribosomal protein L19 OS=Salmonella heidelberg (strain SL476) GN=rplS PE=3 SV=1 gi\|194469131, gi... - gi\|194469131\|ref\|ZP_03075115.1\| ribosomal protein L19 [Salmonella enterica subsp. enterica serovar K... gi\|238909516 - gi\|238909516\|ref\|ZP_04653353.1\| 50S ribosomal protein L19 [Salmonella enterica subsp. enterica serov... RL19_SALCH - 50S ribosomal protein L19 OS=Salmonella choleraesuis GN=rplS PE=3 SV=1 RL19_SALSV - 50S ribosomal protein L19 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplS PE=3 SV=1 gi\|16761526 - gi\|16761526\|ref\|NP_457143.1\| 50S ribosomal protein L19 [Salmonella enterica subsp. enterica serovar ... RL19_SALTY - 50S ribosomal protein L19 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rplS PE... gi\|29142997, gi\|... - gi\|29142997\|ref\|NP_806339.1\| 50S ribosomal protein L19 [Salmonella enterica subsp. enterica serovar ... gi\|213647491 - gi\|213647491\|ref\|ZP_03377544.1\| 50S ribosomal protein L19 [Salmonella enterica subsp. enterica serov... RL19_SALPB - 50S ribosomal protein L19 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplS PE=3 SV=1 gi\|213999731 - gi\|213999731\|ref\|ZP_03410466.1\| 50S ribosomal protein L19 [Salmonella enterica subsp. enterica serov... RL19_SALPC - 50S ribosomal protein L19 OS=Salmonella paratyphi C (strain RKS4594) GN=rplS PE=3 SV=1 lcl\|NC_016856.1_... - [gene=rplS] [protein=50S ribosomal protein L19] [protein_id=YP_005238796.1] [location=complement(286... RL19_SALTI - 50S ribosomal protein L19 OS=Salmonella typhi GN=rplS PE=3 SV=2 RL19_SALTY - 50S ribosomal protein L19 OS=Salmonella typhimurium GN=rplS PE=3 SV=2 RL19_SALTI - 50S ribosomal protein L19 OS=Salmonella typhi GN=rplS PE=3 SV=2 gi\|197287840, gi... - gi\|197287840\|gb\|EDY27228.1\| ribosomal protein L19 [Salmonella enterica subsp. enterica serovar Schwa... gi\|205336473, gi... - gi\|205336473\|gb\|EDZ23237.1\| ribosomal protein L19 [Salmonella enterica subsp. enterica serovar Heide... gi\|205348990, gi... - gi\|205348990\|gb\|EDZ35621.1\| ribosomal protein L19 [Salmonella enterica subsp. enterica serovar Hadar... gi\|168464154, gi... - gi\|195633476\|gb\|EDX51890.1\| ribosomal protein L19 [Salmonella enterica subsp. enterica serovar Newpo... gi\|205329332, gi... - gi\|205329332\|gb\|EDZ16096.1\| ribosomal protein L19 [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|205331843, gi... - gi\|205331843\|gb\|EDZ18607.1\| ribosomal protein L19 [Salmonella enterica subsp. enterica serovar Kentu... RL19_SALCH - 50S ribosomal protein L19 OS=Salmonella choleraesuis GN=rplS PE=3 SV=1 RL19_SALTY - 50S ribosomal protein L19 OS=Salmonella typhimurium GN=rplS PE=3 SV=2 RL19_SALCH - 50S ribosomal protein L19 OS=Salmonella choleraesuis (strain SC-B67) GN=rplS PE=3 SV=1 RL19_SALPA - 50S ribosomal protein L19 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rplS PE=3 SV=3 RL19_SALPA - 50S ribosomal protein L19 OS=Salmonella paratyphi A GN=rplS PE=3 SV=3 RL19_SALPB - 50S ribosomal protein L19 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplS PE=3 SV=1 RL19_SALAR - 50S ribosomal protein L19 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplS...	178.0	[0..1]	[115..1]
RL19_PASMU - 50S ribosomal protein L19 OS=Pasteurella multocida GN=rplS PE=3 SV=2 RL19_PASMU - 50S ribosomal protein L19 OS=Pasteurella multocida (strain Pm70) GN=rplS PE=3 SV=2	178.0	[0..1]	[114..1]
RL19_MANSM - 50S ribosomal protein L19 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplS PE=3 SV=1	177.0	[0..1]	[114..1]
gi\|238791386, gi... - gi\|77976457\|ref\|ZP_00831945.1\| COG0335: Ribosomal protein L19 [Yersinia intermedia ATCC 29909], gi\|2...	177.0	[0..1]	[115..1]
RL19_VIBVY - 50S ribosomal protein L19 OS=Vibrio vulnificus (strain YJ016) GN=rplS PE=3 SV=1 RL19_VIBVU - 50S ribosomal protein L19 OS=Vibrio vulnificus (strain CMCP6) GN=rplS PE=3 SV=3 RL19_VIBVU - 50S ribosomal protein L19 OS=Vibrio vulnificus GN=rplS PE=3 SV=3	177.0	[0..1]	[114..1]
gi\|45504736 - gi\|45504736\|gb\|AAS66827.1\| 50S ribosomal subunit protein [Sodalis glossinidius] RL19_SODGM - 50S ribosomal protein L19 OS=Sodalis glossinidius (strain morsitans) GN=rplS PE=3 SV=1	177.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIIKQLEQ EQMKQDVPSF RPGDTVEVKV WVVEGSKKRL QAFEGVVIAI RNRGLHSAFT  60
   61 VRKISNGEGV ERVFQTHSPV VDSISVKRRG AVRKAKLYYL RERTGKAARI KERLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	1vs6P
Description:	No description for 1vs6P was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits