YRC Public Data Repository - Protein Structure Prediction

Protein:	PGSA_ECOLI
Organism:	Escherichia coli
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGSA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|66768322, gi\|... - gi\|66768322\|ref\|YP_243084.1\| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Xant...	141.0	[0..1]	[180..1]
gi\|88698686, gi\|... - gi\|88707036\|ref\|ZP_01104732.1\| CDP-alcohol phosphatidyltransferase family protein [gamma proteobacte...	134.0	[0..3]	[181..84]
gi\|68548599, gi\|... - gi\|68548599\|ref\|ZP_00588081.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Shewanella amaz...	131.0	[0..3]	[182..15]
gi\|21113243, gi\|... - gi\|21231558\|ref\|NP_637475.1\| CDP-diacylglycerol-glycerol-3- phosphate 3-phosphatidyltransferase [Xan... gi\|188991461, gi... - gi\|188991461\|ref\|YP_001903471.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase ...	131.0	[0..1]	[180..1]
gi\|90439755, gi\|... - gi\|90578922\|ref\|ZP_01234732.1\| putative CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransf...	129.0	[0..1]	[176..1]
gi\|110834167, gi... - gi\|110834167\|ref\|YP_693026.1\| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltrans [Alcanivor...	129.0	[0..3]	[181..8]
gi\|114048561, gi... - gi\|78692257\|ref\|ZP_00856813.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Shewanella sp. ...	129.0	[0..3]	[182..15]
gi\|89051261, gi\|... - gi\|89073043\|ref\|ZP_01159590.1\| putative phosphatidylglycerophosphate synthase [Photobacterium sp. SK...	129.0	[0..1]	[176..1]
gi\|90325331, gi\|... - gi\|90413710\|ref\|ZP_01221699.1\| putative phosphatidylglycerophosphate synthase [Photobacterium profun...	128.0	[0..1]	[176..1]
gi\|77383290, gi\|... - gi\|77459287\|ref\|YP_348794.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Pse...	128.0	[0..3]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFNIPTLLT LFRVILIPFF VLVFYLPVTW SPFAAALIFC VAAVTDWFDG FLARRWNQST  60
   61 RFGAFLDPVA DKVLVAIAMV LVTEHYHSWW VTLPAATMIA REIIISALRE WMAELGKRSS 120
  121 VAVSWIGKVK TTAQMVALAW LLWRPNIWVE YAGIALFFVA AVLTLWSMLQ YLSAARADLL 180
  181 DQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.236572
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits