YRC Public Data Repository - Protein Structure Prediction

Protein:	RL35_ECOLI
Organism:	Escherichia coli
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL35_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|89348412, gi\|... - gi\|89362827\|ref\|ZP_01200629.1\| Ribosomal protein L35 [Xanthobacter autotrophicus Py2], gi\|89348412\|g...	91.0	[0..1]	[63..338]
gi\|116069646, gi... - gi\|116074341\|ref\|ZP_01471603.1\| 50S ribosomal protein L35 [Synechococcus sp. RS9916], gi\|116069646\|g...	87.0	[0..1]	[65..21]
gi\|148718220, gi... - gi\|148826978\|ref\|YP_001291731.1\| 50S ribosomal protein L35 [Haemophilus influenzae PittGG], gi\|14871... gi\|145271870, gi... - gi\|145638898\|ref\|ZP_01794506.1\| 50S ribosomal protein L35 [Haemophilus influenzae PittII], gi\|145271... gi\|144978241, gi... - gi\|145629398\|ref\|ZP_01785196.1\| 50S ribosomal protein L35 [Haemophilus influenzae 22.1-21], gi\|14497... gi\|1574779 - gi\|1574779\|gb\|AAC22964.1\| ribosomal protein L35 (rpL35) [Haemophilus influenzae Rd KW20] gi\|68249988, gi\|... - gi\|68249988\|ref\|YP_249100.1\| 50S ribosomal protein L35 [Haemophilus influenzae 86-028NP], gi\|6805818...	86.0	[0..1]	[65..25]
gi\|83756387, gi\|... - gi\|83814993\|ref\|YP_446895.1\| hypothetical protein SRU_2804 [Salinibacter ruber DSM 13855], gi\|837563...	86.0	[0..1]	[62..51]
gi\|88792297, gi\|... - gi\|88810667\|ref\|ZP_01125924.1\| 50S ribosomal protein L35 [Nitrococcus mobilis Nb-231], gi\|88792297\|g...	86.0	[0..1]	[64..16]
gi\|106882648, gi... - gi\|119945877\|ref\|YP_943557.1\| ribosomal protein L35 [Psychromonas ingrahamii 37], gi\|119864481\|gb\|AB...	86.0	[0..1]	[65..30]
gi\|87301607, gi\|... - gi\|87301607\|ref\|ZP_01084447.1\| 50S ribosomal protein L35 [Synechococcus sp. WH 5701], gi\|87283824\|gb...	84.0	[0..1]	[65..1]
gi\|82523878 - gi\|82523878\|emb\|CAI78601.1\| 50S ribosomal protein L35 [uncultured delta proteobacterium]	83.0	[0..1]	[64..16]
gi\|115281402, gi... - gi\|74016052\|ref\|ZP_00686679.1\| Ribosomal protein L35 [Burkholderia ambifaria AMMD], gi\|72611481\|gb\|E... gi\|118645270, gi... - gi\|118697441\|ref\|ZP_01555520.1\| ribosomal protein L35 [Burkholderia ambifaria MC40-6], gi\|118645270\|...	83.0	[0..1]	[65..17]
gi\|88919819, gi\|... - gi\|88941454\|ref\|ZP_01146870.1\| ribosomal protein L35 [Acidiphilium cryptum JF-5], gi\|88919819\|gb\|EAR...	81.0	[0..1]	[64..72]

Back

Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKIKTVRGA AKRFKKTGKG GFKHKHANLR HILTKKATKR KRHLRPKAMV SKGDLGLVIA  60
   61 CLPYA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1vs63
Description:	No description for 1vs63 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits