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View Structure Prediction Details

Protein: gi|15811782
Organism: SPECIES UNKNOWN
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15811782.

Description E-value Query
Range
Subject
Range
gi|62089198 - gi|62089198|dbj|BAD93043.1| G patch domain and KOW motifs variant [Homo sapiens]
0.0 [2..476] [1..475]
gi|109510496, gi... - gi|109511556|ref|XP_001059240.1| PREDICTED: similar to G patch domain and KOW motifs isoform 2 [Ratt...
0.0 [19..476] [17..476]
gi|62089558 - gi|62089558|gb|AAH92224.1| Gpkow protein [Mus musculus]
0.0 [19..476] [16..487]
gi|76659416 - gi|76659416|ref|XP_616889.2| PREDICTED: similar to G patch domain and KOW motifs isoform 1 [Bos taur...
0.0 [1..476] [1..472]
gi|74007394 - gi|74007394|ref|XP_538033.2| PREDICTED: similar to G patch domain and KOW motifs [Canis familiaris]
0.0 [1..476] [1..484]
gi|109130748 - gi|109130748|ref|XP_001105674.1| PREDICTED: similar to G patch domain and KOW motifs [Macaca mulatta...
0.0 [149..476] [171..498]

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Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSKEGVLP LTAASTAPIS FGFTRTSARR RLADSGDGAG PSPEEKDFLK TVEGRELQSV  60
   61 KPQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [64-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAPKELVIPL IQNGHRRQPP ARPPGPSTDT GALADGVVSQ AVKELIAESK KSLEERENAG  60
   61 VDPTLAIPMI QKGCTPSGEG ADSEPRAETV PEEANYEAVP VEAYGLAMLR GMGWKPGEGI 120
  121 GRTFNQVVKP RVNSLRPKGL GLGANLTEAQ 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [214-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALTPTGPSRM PRPDEEQEKD KEDQPQGLVP GGAVVVLSGP HRGLYGKVEG LDPDNVRAMV  60
   61 RLAVGSRVVT VSEYYLRPVS QQEFDKNTLD LRQQNGTASS RKTLWNQELY IQQDNSERKR 120
  121 KHLPDRQDG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.812 0.289 nucleus b.59.1 XRCC4, N-terminal domain
View Download 0.418 0.289 nucleus d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like
View Download 0.540 0.289 nucleus b.61.4 Quinohemoprotein amine dehydrogenase A chain, domain 3
View Download 0.461 0.289 nucleus b.59.1 XRCC4, N-terminal domain
View Download 0.457 0.289 nucleus b.59.1 XRCC4, N-terminal domain

Predicted Domain #4
Region A:
Residues: [343-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAAKSEKAAP RSQHWLHRDL RVRFVDNMYK GGQYYNTKMI IEDVLSPDTC VCRTDEGRVL  60
   61 EGLREDMLET LVPKAEGDRV MVVLGPQTGR VGHLLSRDRA RSRALVQLPR ENQVVELHYD 120
  121 AICQYMGPSD TDDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.221849
Match: 2ckkA
Description: No description for 2ckkA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle