YRC Public Data Repository - Protein Structure Prediction

Protein:	YJAG_SALTY
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJAG_SALTY.

Description	E-value	Query Range	Subject Range
gi\|82778825, gi\|... - gi\|82778825\|ref\|YP_405174.1\| hypothetical protein SDY_3727 [Shigella dysenteriae Sd197], gi\|81242973...	6.0E-96	[1..196]	[1..196]
gi\|187730832, gi... - gi\|75179640\|ref\|ZP_00699644.1\| COG3068: Uncharacterized protein conserved in bacteria [Shigella boyd...	9.0E-96	[1..196]	[1..196]
gi\|238903056, gi... - gi\|238903056\|ref\|YP_002928852.1\| hypothetical protein BWG_3659 [Escherichia coli BW2952], gi\|2388605... gi\|251787257, gi... - gi\|251787257\|ref\|YP_003001561.1\| hypothetical protein B21_03829 [Escherichia coli BL21], gi\|24237953... gi\|253775371, gi... - gi\|254290691\|ref\|YP_003056439.1\| hypothetical protein ECD_03876 [Escherichia coli BL21(DE3)], gi\|253... gi\|170021998, gi... - gi\|170021998\|ref\|YP_001726952.1\| hypothetical protein EcolC_4026 [Escherichia coli ATCC 8739], gi\|16... gi\|226838491, gi... - gi\|254039256\|ref\|ZP_04873305.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683849... gi\|253975842, gi... - gi\|254163941\|ref\|YP_003047049.1\| hypothetical protein ECB_03876 [Escherichia coli B str. REL606], gi... gi\|170680037, gi... - gi\|170680037\|ref\|YP_001746383.1\| hypothetical protein EcSMS35_4447 [Escherichia coli SMS-3-5], gi\|17... gi\|170083460, gi... - gi\|170083460\|ref\|YP_001732780.1\| hypothetical protein ECDH10B_4188 [Escherichia coli str. K-12 subst... gi\|218363323, gi... - gi\|218556554\|ref\|YP_002389468.1\| hypothetical protein ECIAI1_4214 [Escherichia coli IAI1], gi\|218363... gi\|209921478, gi... - gi\|209921478\|ref\|YP_002295562.1\| hypothetical protein ECSE_4287 [Escherichia coli SE11], gi\|20991473... gi\|218697707, gi... - gi\|218697707\|ref\|YP_002405374.1\| hypothetical protein EC55989_4484 [Escherichia coli 55989], gi\|2183... gi\|124498599, gi... - gi\|124531385\|ref\|ZP_01701695.1\| protein of unknown function DUF416 [Escherichia coli B], gi\|12449859... EG11916 - DUF416 domain protein / DUF416 family protein, function unknown YJAG_ECOLI - Hypothetical protein yjaG - Escherichia coli EG11916 - DUF416 domain protein / DUF416 family protein, function unknown gi\|194429967, gi... - gi\|75208797\|ref\|ZP_00709083.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75238540, gi\|... - gi\|75238540\|ref\|ZP_00722529.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157080182, gi... - gi\|75188729\|ref\|ZP_00701996.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75197863, gi\|... - gi\|75197863\|ref\|ZP_00707933.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|74314493, gi\|... - gi\|74314493\|ref\|YP_312912.1\| hypothetical protein SSON_4172 [Shigella sonnei Ss046], gi\|73857970\|gb\|... gi\|85676070, gi\|... - gi\|89110039\|ref\|AP_003819.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|192925940, gi... - gi\|75255496\|ref\|ZP_00727295.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75514766, gi\|... - gi\|75514766\|ref\|ZP_00736995.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194417003, gi... - gi\|83569017\|ref\|ZP_00920480.1\| COG3068: Uncharacterized protein conserved in bacteria [Shigella dyse... gi\|83584829, gi\|... - gi\|83584829\|ref\|ZP_00923489.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c...	1.0E-95	[1..196]	[1..196]
gi\|191168651, gi... - gi\|75228130\|ref\|ZP_00714799.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c...	1.0E-95	[1..196]	[1..196]
gi\|24054577, gi\|... - gi\|24115283\|ref\|NP_709793.1\| hypothetical protein SF4071 [Shigella flexneri 2a str. 301], gi\|2405457... gi\|30064719, gi\|... - gi\|30064719\|ref\|NP_838890.1\| hypothetical protein S3664 [Shigella flexneri 2a str. 2457T], gi\|300429...	2.0E-95	[1..196]	[1..196]
gi\|91212794, gi\|... - gi\|91212794\|ref\|YP_542780.1\| hypothetical protein UTI89_C3820 [Escherichia coli UTI89], gi\|91074368\|...	3.0E-95	[1..196]	[1..196]
gi\|218434715, gi... - gi\|218707618\|ref\|YP_002415137.1\| hypothetical protein ECUMN_4523 [Escherichia coli UMN026], gi\|21843... gi\|191174295, gi... - gi\|75236729\|ref\|ZP_00720802.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|110644334, gi... - gi\|110644334\|ref\|YP_672064.1\| hypothetical protein ECP_4212 [Escherichia coli 536], gi\|110345926\|gb\|... gi\|115515385, gi... - gi\|117626261\|ref\|YP_859584.1\| hypothetical protein APECO1_2476 [Escherichia coli APEC O1], gi\|115515... gi\|26250770, gi\|... - gi\|26250770\|ref\|NP_756810.1\| hypothetical protein c4956 [Escherichia coli CFT073], gi\|26111201\|gb\|AA... gi\|215267403, gi... - gi\|215489331\|ref\|YP_002331762.1\| hypothetical protein E2348C_4306 [Escherichia coli O127:H6 str. E23... gi\|218561065, gi... - gi\|218561065\|ref\|YP_002393978.1\| hypothetical protein ECS88_4460 [Escherichia coli S88], gi\|21836783... gi\|226903079, gi... - gi\|237702766\|ref\|ZP_04533247.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218692280, gi... - gi\|218692280\|ref\|YP_002400492.1\| hypothetical protein ECED1_4706 [Escherichia coli ED1a], gi\|2184298... gi\|227885471, gi... - gi\|227885471\|ref\|ZP_04003276.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783754... gi\|218372620, gi... - gi\|218702634\|ref\|YP_002410263.1\| hypothetical protein ECIAI39_4389 [Escherichia coli IAI39], gi\|2183...	4.0E-95	[1..196]	[1..196]
gi\|110807849, gi... - gi\|110807849\|ref\|YP_691369.1\| hypothetical protein SFV_4071 [Shigella flexneri 5 str. 8401], gi\|1106...	7.0E-95	[1..196]	[1..196]
gi\|82546341, gi\|... - gi\|82546341\|ref\|YP_410288.1\| hypothetical protein SBO_4020 [Shigella boydii Sb227], gi\|81247752\|gb\|A...	1.0E-94	[1..196]	[1..196]
gi\|168790359, gi... - gi\|189370158\|gb\|EDU88574.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189379085, gi... - gi\|189379085\|gb\|EDU97501.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|254595397, gi... - gi\|254795997\|ref\|YP_003080834.1\| hypothetical protein ECSP_5069 [Escherichia coli O157:H7 str. TW143... gi\|195939625 - gi\|195939625\|ref\|ZP_03085007.1\| hypothetical protein EscherichcoliO157_24982 [Escherichia coli O157:... gi\|208809527, gi... - gi\|208809527\|ref\|ZP_03251864.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|168764579, gi... - gi\|189365454\|gb\|EDU83870.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168771471, gi... - gi\|189359747\|gb\|EDU78166.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|13364398, gi\|... - gi\|15834176\|ref\|NP_312949.1\| hypothetical protein ECs4922 [Escherichia coli O157:H7], gi\|13364398\|db... gi\|187767362, gi... - gi\|187767362\|gb\|EDU31206.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|209751692, gi... - pir\|\|H86091 hypothetical protein yjaG [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189001673, gi... - gi\|189001673\|gb\|EDU70659.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|15804590, gi\|... - gi\|15804590\|ref\|NP_290631.1\| hypothetical protein Z5575 [Escherichia coli O157:H7 EDL933], gi\|125189... gi\|168752036, gi... - gi\|188014027\|gb\|EDU52149.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168758605, gi... - gi\|189354603\|gb\|EDU73022.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|13364398, gi\|... - gi\|15834176\|ref\|NP_312949.1\| hypothetical protein ECs4922 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208814451, gi... - gi\|208814451\|ref\|ZP_03255780.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208740109, gi... - gi\|208819986\|ref\|ZP_03260306.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209398075, gi... - gi\|209398075\|ref\|YP_002273515.1\| hypothetical protein ECH74115_5468 [Escherichia coli O157:H7 str. E... gi\|217324856, gi... - gi\|217324856\|ref\|ZP_03440940.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458...	2.0E-94	[1..196]	[1..196]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQNPIHLRL ERLESWQHVT FMACLCERMY PNYAMFCKQT EFGDGQIYRR ILDLIWETLT  60
   61 VKDAKVNFDS QLEKFEEAIP AADDYDLYGV YPAIDACVAL SELMHSRLSG ETLEHAIEVS 120
  121 KTSITTVAML EMTQAGREMT DEELKTNPAV EQEWDIQWEI FRLLADCEER DIELIKGLRA 180
  181 DLREAGESNI GINFQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.522879
Match:	2q9rA
Description:	No description for 2q9rA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits