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View Structure Prediction Details

Protein: gi|25511883, gi|...
Organism: Salmonella enterica subsp. enterica serovar Typhi
Length: 223 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25511883, gi|....

Description E-value Query
Range
Subject
Range
gi|75230021, gi|... - gi|75230021|ref|ZP_00716531.1| COG0602: Organic radical activating enzymes [Escherichia coli B7A], g...
1.0E-55 [1..223] [1..223]
gi|56129152, gi|... - gi|56414895|ref|YP_151970.1| hypothetical protein SPA2807 [Salmonella enterica subsp. enterica serov...
gi|197363823, gi... - gi|197363823|ref|YP_002143460.1| hypothetical protein SSPA2615 [Salmonella enterica subsp. enterica ...
2.0E-55 [1..223] [1..223]
gi|62129087, gi|... - gi|62181454|ref|YP_217871.1| hypothetical protein SC2884 [Salmonella enterica subsp. enterica serova...
3.0E-55 [1..223] [1..223]
gi|25497213 - gi|25497213|pir||C85928 hypothetical protein ygcF [imported] - Escherichia coli (strain O157:H7, su...
gi|12517243, gi|... - gi|15803295|ref|NP_289328.1| hypothetical protein Z4089 [Escherichia coli O157:H7 EDL933], gi|125172...
4.0E-55 [1..223] [1..223]
gi|74313345, gi|... - gi|74313345|ref|YP_311764.1| hypothetical protein SSON_2930 [Shigella sonnei Ss046], gi|73856822|gb|...
5.0E-55 [1..223] [1..223]
gi|193071786, gi... - gi|75214579|ref|ZP_00713123.1| COG0602: Organic radical activating enzymes [Escherichia coli E110019...
8.0E-55 [1..223] [1..223]
gi|187430912, gi... - gi|75176364|ref|ZP_00696508.1| COG0602: Organic radical activating enzymes [Shigella boydii BS512], ...
gi|75256984, gi|... - gi|75256984|ref|ZP_00728560.1| COG0602: Organic radical activating enzymes [Escherichia coli E22], g...
gi|209920225, gi... - gi|209920225|ref|YP_002294309.1| hypothetical protein ECSE_3034 [Escherichia coli SE11], gi|20991348...
gi|82545074, gi|... - gi|82545074|ref|YP_409021.1| hypothetical protein SBO_2656 [Shigella boydii Sb227], gi|81246485|gb|A...
8.0E-55 [1..223] [1..223]
gi|13363104, gi|... - gi|15832887|ref|NP_311660.1| hypothetical protein ECs3633 [Escherichia coli O157:H7 str. Sakai], gi|...
gi|194438962, gi... - gi|83585572|ref|ZP_00924215.1| COG0602: Organic radical activating enzymes [Escherichia coli 101-1],...
gi|168778760, gi... - gi|189003552|gb|EDU72538.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g...
gi|75187505, gi|... - gi|75187505|ref|ZP_00700772.1| COG0602: Organic radical activating enzymes [Escherichia coli E24377A...
gi|168768869, gi... - gi|189362097|gb|EDU80516.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g...
gi|157162228, gi... - gi|75196747|ref|ZP_00706817.1| COG0602: Organic radical activating enzymes [Escherichia coli HS], gi...
gi|168802847, gi... - gi|189375278|gb|EDU93694.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi...
gi|82778146, gi|... - gi|82778146|ref|YP_404495.1| hypothetical protein SDY_2981 [Shigella dysenteriae Sd197], gi|81242294...
gi|189372100, gi... - gi|189372100|gb|EDU90516.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi...
gi|89109563, gi|... - gi|89109563|ref|AP_003343.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi|856...
gi|170682101, gi... - gi|170682101|ref|YP_001744934.1| hypothetical protein EcSMS35_2910 [Escherichia coli SMS-3-5], gi|17...
gi|170082350, gi... - gi|170082350|ref|YP_001731670.1| hypothetical protein ECDH10B_2944 [Escherichia coli str. K-12 subst...
gi|238860367, gi... - gi|238901913|ref|YP_002927709.1| hypothetical protein BWG_2512 [Escherichia coli BW2952], gi|2388603...
gi|188495163, gi... - gi|188495163|ref|ZP_03002433.1| conserved hypothetical protein [Escherichia coli 53638], gi|18849036...
gi|242378324, gi... - gi|251786051|ref|YP_003000355.1| hypothetical protein B21_02584 [Escherichia coli BL21], gi|24237832...
gi|170766131, gi... - gi|170766131|ref|ZP_02900942.1| conserved hypothetical protein [Escherichia albertii TW07627], gi|17...
gi|253978769, gi... - gi|254289462|ref|YP_003055210.1| hypothetical protein ECD_02622 [Escherichia coli BL21(DE3)], gi|253...
gi|254037826, gi... - gi|254037826|ref|ZP_04871884.1| conserved hypothetical protein [Escherichia sp. 1_1_43], gi|22683945...
gi|254162703, gi... - gi|254162703|ref|YP_003045811.1| hypothetical protein ECB_02622 [Escherichia coli B str. REL606], gi...
gi|254594116, gi... - gi|254794716|ref|YP_003079553.1| hypothetical protein ECSP_3726 [Escherichia coli O157:H7 str. TW143...
gi|168749899, gi... - gi|188015830|gb|EDU53952.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g...
gi|168762823, gi... - gi|189366881|gb|EDU85297.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g...
gi|189354704, gi... - gi|189354704|gb|EDU73123.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g...
gi|218433369, gi... - gi|218706272|ref|YP_002413791.1| hypothetical protein ECUMN_3104 [Escherichia coli UMN026], gi|21843...
gi|218353107, gi... - gi|218696375|ref|YP_002404042.1| hypothetical protein EC55989_3051 [Escherichia coli 55989], gi|2183...
YGCF_ECOLI - Hypothetical protein ygcF - Escherichia coli
gi|195939488 - gi|195939488|ref|ZP_03084870.1| hypothetical protein EscherichcoliO157_24278 [Escherichia coli O157:...
QUEE_ECO57 - 7-carboxy-7-deazaguanine synthase OS=Escherichia coli O157:H7 GN=queE PE=3 SV=1
gi|194416881, gi... - gi|194434862|ref|ZP_03067109.1| conserved hypothetical protein [Shigella dysenteriae 1012], gi|19441...
EG13034 - 7-carboxy-7-deazaguanine synthase; queosine biosynthesis / 7-carboxy-7-deazaguanine synthase; queuos...
QUEE_SHIFL - 7-carboxy-7-deazaguanine synthase OS=Shigella flexneri GN=queE PE=3 SV=1
gi|208813020, gi... - gi|208813020|ref|ZP_03254349.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045...
gi|208725540, gi... - gi|208805739|ref|ZP_03248076.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206...
gi|209398503, gi... - gi|209398503|ref|YP_002272239.1| hypothetical protein ECH74115_4033 [Escherichia coli O157:H7 str. E...
gi|208819186, gi... - gi|208819186|ref|ZP_03259506.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042...
gi|218355253, gi... - gi|218547712|ref|YP_002381503.1| hypothetical protein EFER_0293 [Escherichia fergusonii ATCC 35469],...
gi|217327761, gi... - gi|217327761|ref|ZP_03443844.1| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458...
EG13034 - 7-carboxy-7-deazaguanine synthase; queosine biosynthesis / 7-carboxy-7-deazaguanine synthase; queuos...
gi|24114061, gi|... - gi|24114061|ref|NP_708571.1| hypothetical protein SF2790 [Shigella flexneri 2a str. 301], gi|2405318...
gi|30064123, gi|... - gi|30064123|ref|NP_838294.1| hypothetical protein S2984 [Shigella flexneri 2a str. 2457T], gi|300423...
1.0E-54 [1..223] [1..223]
gi|215266166, gi... - gi|215488094|ref|YP_002330525.1| hypothetical protein E2348C_3044 [Escherichia coli O127:H6 str. E23...
gi|218428460, gi... - gi|218690896|ref|YP_002399108.1| hypothetical protein ECED1_3225 [Escherichia coli ED1a], gi|2184284...
gi|117625003, gi... - gi|117625003|ref|YP_853991.1| hypothetical protein APECO1_3756 [Escherichia coli APEC O1], gi|115514...
gi|218366531, gi... - gi|218559762|ref|YP_002392675.1| hypothetical protein ECS88_3041 [Escherichia coli S88], gi|21836653...
gi|190908479, gi... - gi|75241836|ref|ZP_00725655.1| COG0602: Organic radical activating enzymes [Escherichia coli F11], g...
gi|91073711, gi|... - gi|91212137|ref|YP_542123.1| hypothetical protein UTI89_C3140 [Escherichia coli UTI89], gi|91073711|...
gi|110344507, gi... - gi|110642915|ref|YP_670645.1| hypothetical protein ECP_2755 [Escherichia coli 536], gi|110344507|gb|...
gi|218371254, gi... - gi|218701268|ref|YP_002408897.1| hypothetical protein ECIAI39_2968 [Escherichia coli IAI39], gi|2183...
gi|227834582, gi... - gi|227888313|ref|ZP_04006118.1| radical SAM domain protein [Escherichia coli 83972], gi|227834582|gb...
gi|237706601, gi... - gi|237706601|ref|ZP_04537082.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi|22689...
gi|50250397 - gi|50250397|emb|CAG25841.1| hypothetical protein ygcF [Escherichia coli]
gi|26109580, gi|... - gi|26249173|ref|NP_755213.1| hypothetical protein c3335 [Escherichia coli CFT073], gi|26109580|gb|AA...
1.0E-54 [1..223] [1..223]
gi|110616103, gi... - gi|110806555|ref|YP_690075.1| hypothetical protein SFV_2678 [Shigella flexneri 5 str. 8401], gi|1106...
2.0E-54 [1..223] [1..223]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYPINEMFQ TLQGEGYFTG VPAIFIRLQG CPVGCAWCDT KHTWDKLSDR EVSLFSILAK  60
   61 TKESDKWGAA SSEDLLAVIN RQGYTARHVV ITGGEPCIHD LMPLTDLLEK SGFSCQIETS 120
  121 GTHEVRCTPN TWVTVSPKVN MRGGYDVLSQ ALERANEIKH PVGRVRDIEA LDELLATLSD 180
  181 DKPRVIALQP ISQKEDATRL CIETCIARNW RLSMQTHKYL NIA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.154902
Match: 1tv7A
Description: Structure of the S-adenosylmethionine dependent Enzyme MoaA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.48331922124015 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle