YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16760608
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. CT18
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16760608.

Description	E-value	Query Range	Subject Range
gi\|62127501, gi\|... - gi\|62179868\|ref\|YP_216285.1\| scaffolding protein for murein-synthesizing holoenzyme [Salmonella ente...	4.0E-73	[1..248]	[1..248]
gi\|197094127, gi... - gi\|197362650\|ref\|YP_002142287.1\| putative outer membrane protein [Salmonella enterica subsp. enteric... gi\|56127985, gi\|... - gi\|56413728\|ref\|YP_150803.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se...	8.0E-73	[1..248]	[1..248]
gi\|218705280, gi... - gi\|218705280\|ref\|YP_002412799.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|218369636, gi... - gi\|218699650\|ref\|YP_002407279.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|30062956, gi\|... - gi\|30062956\|ref\|NP_837127.1\| hypothetical protein S1556 [Shigella flexneri 2a str. 2457T], gi\|300412... EG13492 - scaffolding protein for murein synthesizing machinery / MltA-interacting protein; outer membrane; bi... MIPA_SHIFL - MltA-interacting protein OS=Shigella flexneri GN=mipA PE=3 SV=1 gi\|24051757, gi\|... - gi\|24112822\|ref\|NP_707332.1\| hypothetical protein SF1441 [Shigella flexneri 2a str. 301], gi\|2405175... gi\|1742900, gi\|8... - gi\|89108621\|ref\|AP_002401.1\| scaffolding protein for murein synthesizing machinery [Escherichia coli... gi\|91210999, gi\|... - gi\|91210999\|ref\|YP_540985.1\| hypothetical protein UTI89_C1978 [Escherichia coli UTI89], gi\|91072573\|... gi\|110614959, gi... - gi\|110805411\|ref\|YP_688931.1\| hypothetical protein SFV_1433 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|193066591, gi... - gi\|75255303\|ref\|ZP_00727136.1\| COG3713: Outer membrane protein V [Escherichia coli E22], gi\|19306659... gi\|188492141, gi... - gi\|75513720\|ref\|ZP_00736096.1\| COG3713: Outer membrane protein V [Escherichia coli 53638], gi\|188492... gi\|115513076, gi... - gi\|117623952\|ref\|YP_852865.1\| MltA-interacting protein precursor [Escherichia coli APEC O1], gi\|1155... gi\|191168988, gi... - gi\|75227733\|ref\|ZP_00714465.1\| COG3713: Outer membrane protein V [Escherichia coli B7A], gi\|19116898... gi\|124498124, gi... - gi\|124532173\|ref\|ZP_01702136.1\| MltA-interacting MipA family protein [Escherichia coli B], gi\|124498... gi\|192957759, gi... - gi\|75236751\|ref\|ZP_00720822.1\| COG3713: Outer membrane protein V [Escherichia coli E110019], gi\|1930... gi\|82543819, gi\|... - gi\|82543819\|ref\|YP_407766.1\| hypothetical protein SBO_1311 [Shigella boydii Sb227], gi\|81245230\|gb\|A... gi\|73855384, gi\|... - gi\|74311907\|ref\|YP_310326.1\| hypothetical protein SSON_1380 [Shigella sonnei Ss046], gi\|73855384\|gb\|... gi\|81240914, gi\|... - gi\|82776766\|ref\|YP_403115.1\| hypothetical protein SDY_1485 [Shigella dysenteriae Sd197], gi\|81240914... gi\|194439631, gi... - gi\|83584968\|ref\|ZP_00923623.1\| COG3713: Outer membrane protein V [Escherichia coli 101-1], gi\|194439... EG13492 - scaffolding protein for murein synthesizing machinery / MltA-interacting protein; outer membrane; bi... gi\|157066923, gi... - gi\|75195850\|ref\|ZP_00705920.1\| COG3713: Outer membrane protein V [Escherichia coli HS], gi\|157161243... gi\|75210259, gi\|... - gi\|75210259\|ref\|ZP_00710427.1\| COG3713: Outer membrane protein V [Escherichia coli B171], gi\|1944285... gi\|237705734, gi... - gi\|237705734\|ref\|ZP_04536215.1\| outer membrane protein [Escherichia sp. 3_2_53FAA], gi\|226900491\|gb\|... gi\|187731802, gi... - gi\|75177297\|ref\|ZP_00697386.1\| COG3713: Outer membrane protein V [Shigella boydii BS512], gi\|1877318... gi\|238900996, gi... - gi\|238900996\|ref\|YP_002926792.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|75190813, gi\|... - gi\|75190813\|ref\|ZP_00704080.1\| COG3713: Outer membrane protein V [Escherichia coli E24377A], gi\|1571... gi\|251785230, gi... - gi\|251785230\|ref\|YP_002999534.1\| hypothetical protein B21_01739 [Escherichia coli BL21], gi\|24237750... gi\|170019872, gi... - gi\|170019872\|ref\|YP_001724826.1\| MltA-interacting MipA family protein [Escherichia coli ATCC 8739], ... gi\|253977935, gi... - gi\|254288628\|ref\|YP_003054376.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|253973741, gi... - gi\|254161840\|ref\|YP_003044948.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|170682310, gi... - gi\|170682310\|ref\|YP_001743467.1\| MltA-interacting protein MipA [Escherichia coli SMS-3-5], gi\|170520... gi\|170081438, gi... - gi\|170081438\|ref\|YP_001730758.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|218554350, gi... - gi\|218554350\|ref\|YP_002387263.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|209919144, gi... - gi\|209919144\|ref\|YP_002293228.1\| scaffolding protein for murein-synthesizing holoenzyme [Escherichia... gi\|218695341, gi... - gi\|218695341\|ref\|YP_002403008.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|218558650, gi... - gi\|218558650\|ref\|YP_002391563.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... MIPA_ECOLI - MltA-interacting protein precursor - Escherichia coli	1.0E-72	[1..248]	[1..248]
gi\|75241343, gi\|... - gi\|75241343\|ref\|ZP_00725194.1\| COG3713: Outer membrane protein V [Escherichia coli F11], gi\|19117165... gi\|110641904, gi... - gi\|110641904\|ref\|YP_669634.1\| MltA-interacting protein precursor [Escherichia coli 536], gi\|11034349...	1.0E-72	[1..248]	[1..248]
gi\|194433465, gi... - gi\|83569610\|ref\|ZP_00921061.1\| COG3713: Outer membrane protein V [Shigella dysenteriae 1012], gi\|194...	2.0E-72	[1..248]	[1..248]
gi\|254592804, gi... - gi\|254793404\|ref\|YP_003078241.1\| scaffolding protein for murein synthesizing machinery [Escherichia ... gi\|15831745, gi\|... - gi\|15831745\|ref\|NP_310518.1\| putative scaffolding protein in the formation of a murein-synthesizing ... gi\|217328994, gi... - gi\|217328994\|ref\|ZP_03445075.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. TW14588... gi\|209162024, gi... - gi\|209400624\|ref\|YP_002270857.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4115... gi\|25325844, gi\|... - pir\|\|G85788 hypothetical protein yeaF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12515816, gi\|... - gi\|15802196\|ref\|NP_288218.1\| hypothetical protein Z2822 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|15831745, gi\|... - gi\|15831745\|ref\|NP_310518.1\| putative scaffolding protein in the formation of a murein-synthesizing ... gi\|189376756, gi... - gi\|189376756\|gb\|EDU95172.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC508], gi\|... gi\|189372026, gi... - gi\|189372026\|gb\|EDU90442.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC869], gi\|... gi\|189000331, gi... - gi\|189000331\|gb\|EDU69317.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4076], gi... gi\|187769383, gi... - gi\|187769383\|gb\|EDU33227.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4196], gi... gi\|208818624, gi... - gi\|208818624\|ref\|ZP_03258944.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4042]... gi\|208731364, gi... - gi\|208817021\|ref\|ZP_03258141.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4045]... gi\|208810214, gi... - gi\|208810214\|ref\|ZP_03252090.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4206]... gi\|195937470 - gi\|195937470\|ref\|ZP_03082852.1\| putative scaffolding protein in the formation of a murein-synthesizi... gi\|189360395, gi... - gi\|189360395\|gb\|EDU78814.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4486], gi... gi\|189365704, gi... - gi\|189365704\|gb\|EDU84120.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4501], gi... gi\|168758087, gi... - gi\|189355032\|gb\|EDU73451.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4401], gi... gi\|188016313, gi... - gi\|188016313\|gb\|EDU54435.1\| MltA-interacting protein MipA [Escherichia coli O157:H7 str. EC4113], gi...	5.0E-72	[1..248]	[1..248]
gi\|26248041, gi\|... - gi\|26248041\|ref\|NP_754081.1\| MltA-interacting protein precursor [Escherichia coli CFT073], gi\|261084...	8.0E-72	[1..248]	[1..248]
gi\|153949500, gi... - gi\|77629164\|ref\|ZP_00791750.1\| COG3713: Outer membrane protein V [Yersinia pseudotuberculosis IP 317... gi\|165927683, gi... - gi\|165927683\|ref\|ZP_02223515.1\| MltA-interacting protein [Yersinia pestis biovar Orientalis str. F19... gi\|165991956, gi... - gi\|166009401\|ref\|ZP_02230299.1\| MltA-interacting protein [Yersinia pestis biovar Antiqua str. E19790... gi\|229702302, gi... - gi\|229894829\|ref\|ZP_04510009.1\| scaffolding protein for murein synthesizing machinery [Yersinia pest... gi\|166208324, gi... - gi\|166211144\|ref\|ZP_02237179.1\| MltA-interacting protein [Yersinia pestis biovar Antiqua str. B42003... gi\|229693910, gi... - gi\|229897573\|ref\|ZP_04512729.1\| scaffolding protein for murein synthesizing machinery [Yersinia pest... gi\|167401473, gi... - gi\|167401473\|ref\|ZP_02306970.1\| MltA-interacting protein [Yersinia pestis biovar Antiqua str. UG05-0... gi\|229898218, gi... - gi\|229898218\|ref\|ZP_04513366.1\| scaffolding protein for murein synthesizing machinery [Yersinia pest... gi\|166961855, gi... - gi\|167420160\|ref\|ZP_02311913.1\| MltA-interacting protein [Yersinia pestis biovar Orientalis str. MG0... gi\|89101821, gi\|... - gi\|89101821\|ref\|ZP_01174513.1\| COG3713: Outer membrane protein V [Yersinia pestis biovar Orientalis ... gi\|167054429, gi... - gi\|167426553\|ref\|ZP_02318306.1\| MltA-interacting protein [Yersinia pestis biovar Mediaevalis str. K1... gi\|108807508, gi... - gi\|108807508\|ref\|YP_651424.1\| hypothetical protein YPA_1512 [Yersinia pestis Antiqua], gi\|108779421\|... gi\|170024332, gi... - gi\|170024332\|ref\|YP_001720837.1\| MltA-interacting MipA family protein [Yersinia pseudotuberculosis Y... gi\|229902079, gi... - gi\|229902079\|ref\|ZP_04517200.1\| scaffolding protein for murein synthesizing machinery [Yersinia pest... gi\|186895452, gi... - gi\|186895452\|ref\|YP_001872564.1\| MltA-interacting MipA family protein [Yersinia pseudotuberculosis P... Q66AP9\|Q66AP9_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|25325845 - pir\|\|AG0262 probable exported protein YPO2155 [imported] - Yersinia pestis (strain CO92) gi\|45441756, gi\|... - gi\|45441756\|ref\|NP_993295.1\| hypothetical protein YP_1955 [Yersinia pestis biovar Microtus str. 9100... gi\|22126055, gi\|... - gi\|22126055\|ref\|NP_669478.1\| hypothetical protein y2167 [Yersinia pestis KIM], gi\|21959008\|gb\|AAM857... gi\|16122387, gi\|... - gi\|218929255\|ref\|YP_002347130.1\| hypothetical protein YPO2155 [Yersinia pestis CO92], gi\|16122387\|re... gi\|51596407, gi\|... - gi\|51596407\|ref\|YP_070598.1\| hypothetical protein YPTB2081 [Yersinia pseudotuberculosis IP 32953], g... gi\|77634450 - gi\|77634450\|ref\|ZP_00796550.1\| COG3713: Outer membrane protein V [Yersinia pestis Angola] gi\|149292335, gi... - gi\|149365922\|ref\|ZP_01887957.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149292335\|... gi\|145209972, gi... - gi\|145598276\|ref\|YP_001162352.1\| hypothetical protein YPDSF_0979 [Yersinia pestis Pestoides F], gi\|1...	2.0E-70	[1..248]	[8..255]
gi\|37526451, gi\|... - gi\|37526451\|ref\|NP_929795.1\| MltA-interacting protein precursor [Photorhabdus luminescens subsp. lau...	2.0E-67	[1..248]	[2..250]
gi\|77977684 - gi\|77977684\|ref\|ZP_00833126.1\| COG3713: Outer membrane protein V [Yersinia intermedia ATCC 29909]	3.0E-62	[23..248]	[6..231]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKLKLLALG VFIATSASVA HAESNLTLGA GVGVVEHPYK DYDSDVYPIP VIAYESENFW  60
   61 FRGLGGGYYL WNDNADKLSI MAYWSPMYFK PGDSDDHQLR RLDRRKSTMM AGVSYAHHTQ 120
  121 YGFLRTSLAG DTLDNSNGIV WDLAWLYRYT NGGLTLTPGI GVEWNSENQN DYYYGVSRKE 180
  181 SSRSGLRGYN PNDSWNPYLE LSANYNFAGN WSVYGTARYT RLSDEITDSP MVDKSWTGIL 240
  241 STGVTYRF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.51
Match:	2f1tA
Description:	Outer membrane protein OmpW
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits