YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29142498, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29142498, gi|....

Description	E-value	Query Range	Subject Range
gi\|206708045, gi... - gi\|207856242\|ref\|YP_002242893.1\| molybdopterin synthase small subunit [Salmonella enterica subsp. en... gi\|16764168, gi\|... - gi\|16764168\|ref\|NP_459783.1\| molybdopterin biosynthetic protein [Salmonella typhimurium LT2], gi\|164... gi\|205271844, gi... - gi\|205352063\|ref\|YP_002225864.1\| molybdopterin synthase small subunit [Salmonella enterica subsp. en...	1.0E-25	[1..83]	[1..83]
gi\|62127006, gi\|... - gi\|62179373\|ref\|YP_215790.1\| molybdopterin synthase small subunit [Salmonella enterica subsp. enteri... gi\|224467145, gi... - gi\|224582618\|ref\|YP_002636416.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica sub... gi\|200390099, gi... - gi\|200390099\|ref\|ZP_03216710.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica subs... gi\|198243899, gi... - gi\|198243899\|ref\|YP_002214769.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica sub... gi\|197263533, gi... - gi\|197263533\|ref\|ZP_03163607.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica subs... gi\|194469130, gi... - gi\|194469130\|ref\|ZP_03075114.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica subs... gi\|194402195, gi... - gi\|194443532\|ref\|YP_002040040.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica sub... gi\|168820052, gi... - gi\|205343053\|gb\|EDZ29817.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica subsp. e... gi\|195631002, gi... - gi\|195631002\|gb\|EDX49588.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica subsp. e... gi\|205334757, gi... - gi\|205334757\|gb\|EDZ21521.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica subsp. e... gi\|167992036, gi... - gi\|205329643\|gb\|EDZ16407.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica subsp. e... gi\|161614957, gi... - gi\|161614957\|ref\|YP_001588922.1\| molybdopterin synthase small subunit [Salmonella enterica subsp. en... gi\|161353607 - gi\|161353607\|ref\|NP_459783.2\| molybdopterin synthase small subunit [Salmonella typhimurium LT2] gi\|238913364 - gi\|238913364\|ref\|ZP_04657201.1\| molybdopterin synthase small subunit [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=moaD] [protein=molybdopterin synthase small subunit] [protein_id=YP_005236526.1] [location=872...	5.0E-25	[3..83]	[1..81]
gi\|13360321, gi\|... - gi\|15830116\|ref\|NP_308889.1\| molybdopterin biosynthesis protein D chain [Escherichia coli O157:H7], ... gi\|209776042, gi... - pir\|\|G85586 molybdopterin biosynthesis [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|251784303, gi... - gi\|251784303\|ref\|YP_002998607.1\| hypothetical protein B21_00768 [Escherichia coli BL21], gi\|24237657... gi\|12513773, gi\|... - gi\|15800535\|ref\|NP_286547.1\| molybdopterin synthase small subunit [Escherichia coli O157:H7 EDL933],... gi\|254287675, gi... - gi\|254287675\|ref\|YP_003053423.1\| molybdopterin synthase, small subunit [Escherichia coli BL21(DE3)],... gi\|253972762, gi... - gi\|254160861\|ref\|YP_003043969.1\| molybdopterin synthase, small subunit [Escherichia coli B str. REL6... gi\|168786997, gi... - gi\|189373164\|gb\|EDU91580.1\| molybdopterin converting factor, subunit 1 [Escherichia coli O157:H7 str... gi\|168764313, gi... - gi\|189365669\|gb\|EDU84085.1\| molybdopterin converting factor, subunit 1 [Escherichia coli O157:H7 str... gi\|170683802, gi... - gi\|170683802\|ref\|YP_001742887.1\| molybdopterin converting factor, subunit 1 [Escherichia coli SMS-3-... gi\|189377760, gi... - gi\|189377760\|gb\|EDU96176.1\| molybdopterin converting factor, subunit 1 [Escherichia coli O157:H7 str... gi\|13360321, gi\|... - gi\|15830116\|ref\|NP_308889.1\| molybdopterin synthase small subunit [Escherichia coli O157:H7 str. Sak... gi\|218704162, gi... - gi\|218704162\|ref\|YP_002411681.1\| molybdopterin synthase small subunit [Escherichia coli UMN026], gi\|... gi\|217326433, gi... - gi\|217326433\|ref\|ZP_03442517.1\| molybdopterin converting factor, subunit 1 [Escherichia coli O157:H7... gi\|194438434, gi... - gi\|83586088\|ref\|ZP_00924725.1\| COG1977: Molybdopterin converting factor, small subunit [Escherichia ...	7.0E-24	[3..83]	[1..81]
gi\|237707258, gi... - gi\|237707258\|ref\|ZP_04537739.1\| molybdopterin converting factor subunit 1 [Escherichia sp. 3_2_53FAA... gi\|91071389, gi\|... - gi\|91209815\|ref\|YP_539801.1\| molybdopterin converting factor subunit 1 [Escherichia coli UTI89], gi\|... gi\|26107155, gi\|... - gi\|26246756\|ref\|NP_752796.1\| Molybdopterin converting factor subunit 1 [Escherichia coli CFT073], gi...	9.0E-24	[3..83]	[8..88]
gi\|81240294, gi\|... - gi\|82776146\|ref\|YP_402493.1\| molybdopterin synthase small subunit [Shigella dysenteriae Sd197], gi\|8...	9.0E-24	[3..83]	[1..81]
gi\|74311328, gi\|... - gi\|74311328\|ref\|YP_309747.1\| molybdopterin synthase small subunit [Shigella sonnei Ss046], gi\|738548... gi\|56479728, gi\|... - gi\|56479728\|ref\|NP_706662.2\| molybdopterin synthase small subunit [Shigella flexneri 2a str. 301], g... gi\|110614333, gi... - gi\|110804785\|ref\|YP_688305.1\| molybdopterin synthase small subunit [Shigella flexneri 5 str. 8401], ... gi\|30062269, gi\|... - gi\|30062269\|ref\|NP_836440.1\| molybdopterin synthase small subunit [Shigella flexneri 2a str. 2457T],...	1.0E-23	[3..83]	[1..81]
gi\|90439971, gi\|... - gi\|90579138\|ref\|ZP_01234948.1\| hypothetical protein VAS14_05513 [Vibrio angustum S14], gi\|90439971\|g...	2.0E-23	[3..83]	[1..81]
gi\|42011 - gi\|42011\|emb\|CAA49864.1\| moaD [Escherichia coli]	2.0E-23	[3..83]	[1..81]
gi\|75189826, gi\|... - gi\|75189826\|ref\|ZP_00703093.1\| COG1977: Molybdopterin converting factor, small subunit [Escherichia ...	2.0E-23	[3..83]	[1..81]
EG11597 - molybdopterin synthase, small subunit / Molybdopterin (MPT) synthase, small subunit; chlorate resist... gi\|89107635, gi\|... - gi\|89107635\|ref\|AP_001415.1\| molybdopterin synthase, small subunit [Escherichia coli str. K-12 subst... gi\|68056439, gi\|... - gi\|68056439\|ref\|ZP_00540559.1\| Molybdopterin converting factor, subunit 1 [Exiguobacterium sibiricum... gi\|71668640, gi\|... - gi\|71678197\|ref\|ZP_00675919.1\| Molybdopterin converting factor, subunit 1 [Trichodesmium erythraeum ... gi\|160354454, gi... - gi\|163765070\|ref\|ZP_02172113.1\| Molybdopterin converting factor small subunit-like protein [Bacillus... gi\|169888278, gi... - gi\|170080443\|ref\|YP_001729763.1\| molybdopterin synthase, small subunit [Escherichia coli str. K-12 s... gi\|169755788, gi... - gi\|170020860\|ref\|YP_001725814.1\| molybdopterin synthase small subunit [Escherichia coli ATCC 8739], ... gi\|218553367, gi... - gi\|218553367\|ref\|YP_002386280.1\| molybdopterin synthase small subunit [Escherichia coli IAI1], gi\|21... gi\|75512788, gi\|... - gi\|75512788\|ref\|ZP_00735280.1\| COG1977: Molybdopterin converting factor, small subunit [Escherichia ... gi\|76587091, gi\|... - gi\|76797541\|ref\|ZP_00779843.1\| Molybdopterin converting factor, subunit 1 [Thermoanaerobacter ethano... gi\|81244642, gi\|... - gi\|82543231\|ref\|YP_407178.1\| molybdopterin synthase small subunit [Shigella boydii Sb227], gi\|812446... gi\|118010273, gi... - gi\|118065705\|ref\|ZP_01533975.1\| molybdopterin converting factor, subunit 1 [Roseiflexus castenholzii... gi\|187429061, gi... - gi\|75178425\|ref\|ZP_00698479.1\| COG1977: Molybdopterin converting factor, small subunit [Shigella boy... gi\|89203333, gi\|... - gi\|89203333\|ref\|ZP_01182013.1\| Molybdopterin converting factor, subunit 1 [Bacillus cereus subsp. cy... gi\|124501348, gi... - gi\|124527003\|ref\|ZP_01698840.1\| molybdopterin converting factor, subunit 1 [Escherichia coli B], gi\|... gi\|238861804, gi... - gi\|238900043\|ref\|YP_002925839.1\| molybdopterin synthase, small subunit [Escherichia coli BW2952], gi... gi\|157160259, gi... - gi\|75194936\|ref\|ZP_00705006.1\| COG1977: Molybdopterin converting factor, small subunit [Escherichia ... gi\|75227410, gi\|... - gi\|75227410\|ref\|ZP_00714184.1\| COG1977: Molybdopterin converting factor, small subunit [Escherichia ... gi\|193069391, gi... - gi\|75236157\|ref\|ZP_00720281.1\| COG1977: Molybdopterin converting factor, small subunit [Escherichia ... EG11597 - molybdopterin synthase, small subunit / Molybdopterin (MPT) synthase, small subunit; chlorate resist... MOAD_ECOLI - Molybdopterin-converting factor subunit 1 (MPT synthase subunit 1) (Molybdopterin synthase subunit 1... gi\|75257617, gi\|... - gi\|75257617\|ref\|ZP_00729114.1\| COG1977: Molybdopterin converting factor, small subunit [Escherichia ...	3.0E-23	[3..83]	[1..81]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMIKVLFFA HVRELTGTDA LDLPADFSTV ESLRQHLATK SDRWALALED GKLLAAVNQT  60
   61 LVSFDHPLTA GDEVAFFPPV TGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1fm0D
Description:	Molybdopterin synthase subunit MoaD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.615221168962415	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: