YRC Public Data Repository - Protein Structure Prediction

Protein:	RHLB_ECOLI
Organism:	Escherichia coli
Length:	421 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RHLB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|84362846 - gi\|84362846\|ref\|ZP_00987458.1\| COG0513: Superfamily II DNA and RNA helicases [Burkholderia dolosa AU...	378.0	[0..10]	[420..2]
RHLB_SHIDS - ATP-dependent RNA helicase RhlB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rhlB PE=3 SV=1	375.0	[0..1]	[421..1]
gi\|146294196, gi... - gi\|77814042\|ref\|ZP_00813311.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella p...	375.0	[0..1]	[421..1]
gi\|82719006, gi\|... - gi\|82743623\|ref\|ZP_00906258.1\| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Shewanella s...	375.0	[0..1]	[421..1]
gi\|148184 - gi\|148184\|gb\|AAA67581.1\| unknown [Escherichia coli] gi\|148184\|gb\|AAA... - unknown [Escherichia coli]	374.0	[0..1]	[421..1]
gi\|115423820, gi... - gi\|187479233\|ref\|YP_787258.1\| ATP-dependent RNA helicase [Bordetella avium 197N], gi\|115423820\|emb\|C...	373.0	[0..1]	[420..1]
gi\|77968212, gi\|... - gi\|78067467\|ref\|YP_370236.1\| DEAD/DEAH box helicase [Burkholderia sp. 383], gi\|77968212\|gb\|ABB09592....	373.0	[0..10]	[396..2]
gi\|25496536, gi\|... - pir\|\|B86064 probable ATP-dependent RNA helicase rhlB [imported] - Escherichia coli (strain O157:H7, ... gi\|217325465, gi... - gi\|217325465\|ref\|ZP_03441549.1\| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. TW145... gi\|12518640, gi\|... - gi\|15804370\|ref\|NP_290410.1\| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 EDL933], gi\|1... gi\|189365822, gi... - gi\|189365822\|gb\|EDU84238.1\| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. EC4501], ... RHLB_ECO57 - ATP-dependent RNA helicase RhlB OS=Escherichia coli O157:H7 GN=rhlB PE=3 SV=3 gi\|15833967, gi\|... - gi\|15833967\|ref\|NP_312740.1\| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str. Sakai], ...	372.0	[0..1]	[421..1]
gi\|33566623 - gi\|33566623\|emb\|CAE38832.1\| putative ATP-dependent RNA helicase [Bordetella parapertussis] gi\|33598065 - gi\|33598065\|ref\|NP_885708.1\| putative ATP-dependent RNA helicase [Bordetella parapertussis 12822]	371.0	[0..7]	[421..15]
gi\|56313556, gi\|... - gi\|56477513\|ref\|YP_159102.1\| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1], gi\|56313556\|e...	371.0	[0..6]	[418..2]

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Predicted Domain #1

Region A:
Residues: [1-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTHLTEQK FSDFALHPKV VEALEKKGFH NCTPIQALAL PLTLAGRDVA GQAQTGTGKT  60
   61 MAFLTSTFHY LLSHPAIADR KVNQPRALIM APTRELAVQI HADAEPLAEA TGLKLGLAYG 120
  121 GDGYDKQLKV LESGVDILIG TTGRLIDYAK QNHINLGAIQ VVVLDEADRM YDLGFIKDIR 180
  181 WLFRRMPPAN QRLNMLFSAT LSYRVRELAF EQMNNAEYIE VEPEQKTGHR IKEELFYPSN 240
  241 EEKMRLLQTL IEEEWPDRAI IFANTKHRCE EIWGHLAADG HRVGLLTGDV AQKKRLRILD 300
  301 EFTRGDLDIL VATDVAARGL HIPAVTHVFN YDLPDDCEDY VHRIGRTGRA GASGHSISLA 360
  361 CEEYALNLPA IETYIGHSIP VSKYNPDALM TDLPKPLRLT RPRTGNGPRR TGAPRNRRRS 420
  421 G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.154902
Match:	2i4iA
Description:	No description for 2i4iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits