YRC Public Data Repository - Protein Structure Prediction

Protein:	INSK_ECOLI
Organism:	Escherichia coli
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INSK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|46242587 - gi\|46242587\|gb\|AAS83411.1\| putative transposase OCP [uncultured Ralstonia sp.]	199.0	[0..4]	[282..107]
gi\|18652680\|gb\|A... - orfB in IS150 [Escherichia coli] gi\|18652680 - gi\|18652680\|gb\|AAB18535.2\| orfB in IS150 [Escherichia coli str. K-12 substr. MG1655]	190.0	[0..1]	[283..1]
gi\|110615289, gi... - gi\|110805741\|ref\|YP_689261.1\| IS600 ORF2 [Shigella flexneri 5 str. 8401], gi\|110615289\|gb\|ABF03956.1...	189.0	[0..2]	[280..96]
gi\|75188988, gi\|... - gi\|75188988\|ref\|ZP_00702255.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli E2... gi\|194437827, gi... - gi\|83586674\|ref\|ZP_00925306.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli 10... gi\|218698131, gi... - gi\|218698131\|ref\|YP_002405798.1\| hypothetical protein EC55989_4948 [Escherichia coli 55989], gi\|2183...	189.0	[0..2]	[280..94]
gi\|110807351, gi... - gi\|110807351\|ref\|YP_690871.1\| IS150 ORF2 [Shigella flexneri 5 str. 8401], gi\|110804571\|ref\|YP_688091... gi\|24114824, gi\|... - gi\|24114824\|ref\|NP_709334.1\| IS150 ORF2 [Shigella flexneri 2a str. 301], gi\|24111927\|ref\|NP_706437.1... gi\|30043425, gi\|... - gi\|30065164\|ref\|NP_839335.1\| IS150 putative transposase [Shigella flexneri 2a str. 2457T], gi\|300434...	188.0	[0..1]	[283..1]
gi\|170517665, gi... - gi\|170679947\|ref\|YP_001743153.1\| IS150 transposase orfB [Escherichia coli SMS-3-5], gi\|170517665\|gb\|... gi\|117624195, gi... - gi\|117624195\|ref\|YP_853108.1\| putative transposase subunit [Escherichia coli APEC O1], gi\|115513319\|...	186.0	[0..1]	[283..1]
gi\|30062890, gi\|... - gi\|30062890\|ref\|NP_837061.1\| IS103 orf [Shigella flexneri 2a str. 2457T], gi\|30041138\|gb\|AAP16868.1\|...	185.0	[0..1]	[283..1]
gi\|75212177, gi\|... - gi\|75212177\|ref\|ZP_00712217.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli B1...	185.0	[0..2]	[280..94]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLNELRQF YPLDELLRAA EIPRSTFYYH LKALSKPDKY ADVKKRISEI YHENRGRYGY  60
   61 RRVTLSLHRE GKQINHKAVQ RLMGTLSLKA AIKVKRYRSY RGEVGQTAPN VL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRDFKATRPN EKWVTDVTEF AVNGRKLYLS PVIDLFNNEV ISYSLSERPV MNMVENMLDQ  60
   61 AFKKLNPHEH PVLHSDQGWQ YRMRRYQNIL KEHGIKQSMS RKGNCLDNAV VECFFGTLKS 120
  121 ECFYLDEFSN ISELKDAVTE YIEYYNSRRI SLKLKGLTPI EYRNQTYMPR V

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.48
Match:	1bcmA
Description:	mu transposase, C-terminal domain; mu transposase, core domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits