YRC Public Data Repository - Protein Structure Prediction

Protein:	ARGD_ECOLI
Organism:	Escherichia coli
Length:	406 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARGD_ECOLI.

Description	E-value	Query Range	Subject Range
ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1 ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JA...	408.0	[0..1]	[403..1]
ARGD_THETN - Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1 ARGD_CALS4 - Acetylornithine aminotransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 1...	405.0	[0..13]	[404..5]
gi\|110601528, gi... - gi\|222054221\|ref\|YP_002536583.1\| acetylornithine and succinylornithine aminotransferase [Geobacter s...	405.0	[0..5]	[403..2]
gi\|88917343, gi\|... - gi\|88935900\|ref\|ZP_01141523.1\| Acetylornithine and succinylornithine aminotransferase [Geobacter ura...	402.0	[0..5]	[403..2]
gi\|85859272, gi\|... - gi\|85859272\|ref\|YP_461474.1\| acetylornithine aminotransferase [Syntrophus aciditrophicus SB], gi\|857...	402.0	[0..5]	[402..2]
gi\|148546674, gi... - gi\|82737730\|ref\|ZP_00900576.1\| Acetylornithine and succinylornithine aminotransferase [Pseudomonas p... tr\|I7AZT5\|I7AZT5... - Acetylornithine aminotransferase OS=Pseudomonas putida (strain DOT-T1E) GN=argD PE=3 SV=1	400.0	[0..1]	[406..1]
gi\|134298152, gi... - gi\|88944090\|ref\|ZP_01147423.1\| Acetylornithine and succinylornithine aminotransferase [Desulfotomacu...	399.0	[0..5]	[400..2]
gi\|56461418, gi\|... - gi\|56461418\|ref\|YP_156699.1\| bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine...	399.0	[0..1]	[405..1]
ARGD_PSEPK - Acetylornithine aminotransferase OS=Pseudomonas putida (strain KT2440) GN=argD PE=3 SV=1	398.0	[0..1]	[406..1]
gi\|116696578, gi... - gi\|71546438\|ref\|ZP_00667239.1\| Acetylornithine and succinylornithine aminotransferase [Syntrophobact...	398.0	[0..7]	[402..2]

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Predicted Domain #1

Region A:
Residues: [1-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIEQTAITR ATFDEVILPI YAPAEFIPVK GQGSRIWDQQ GKEYVDFAGG IAVTALGHCH  60
   61 PALVNALKTQ GETLWHISNV FTNEPALRLG RKLIEATFAE RVVFMNSGTE ANETAFKLAR 120
  121 HYACVRHSPF KTKIIAFHNA FHGRSLFTVS VGGQPKYSDG FGPKPADIIH VPFNDLHAVK 180
  181 AVMDDHTCAV VVEPIQGEGG VTAATPEFLQ GLRELCDQHQ ALLVFDEVQC GMGRTGDLFA 240
  241 YMHYGVTPDI LTSAKALGGG FPISAMLTTA EIASAFHPGS HGSTYGGNPL ACAVAGAAFD 300
  301 IINTPEVLEG IQAKRQRFVD HLQKIDQQYD VFSDIRGMGL LIGAELKPQY KGRARDFLYA 360
  361 GAEAGVMVLN AGPDVMRFAP SLVVEDADID EGMQRFAHAV AKVVGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	2e54A
Description:	No description for 2e54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits