YRC Public Data Repository - Protein Structure Prediction

Protein:	GLMM_ECOLI
Organism:	Escherichia coli
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLMM_ECOLI.

Description	E-value	Query Range	Subject Range
GLMM_ACTSZ - Phosphoglucosamine mutase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=glmM PE=3 SV=...	483.0	[0..1]	[443..1]
GLMM_PSEE4 - Phosphoglucosamine mutase OS=Pseudomonas entomophila (strain L48) GN=glmM PE=3 SV=1 gi\|95109010 - gi\|95109010\|emb\|CAK13706.1\| phosphoglucosamine mutase [Pseudomonas entomophila L48]	482.0	[0..3]	[445..2]
gi\|114547324, gi... - gi\|114772135\|ref\|ZP_01449518.1\| PGM/PMM-family protein [alpha proteobacterium HTCC2255], gi\|11454732... gi\|114772135 - gi\|114772135\|ref\|ZP_01449518.1\| PGM/PMM-family protein [alpha proteobacterium HTCC2255] gi\|221134250 - gi\|221134250\|ref\|ZP_03560555.1\| phosphoglucosamine mutase [Glaciecola sp. HTCC2999]	478.0	[0..1]	[444..1]
GLMM_PSEP1 - Phosphoglucosamine mutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=glmM PE=3 SV=1	478.0	[0..3]	[445..2]
gi\|168463485, gi... - gi\|195633359\|gb\|EDX51773.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serovar N... gi\|205348399, gi... - gi\|205348399\|gb\|EDZ35030.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serovar H... GLMM_SALNS - Phosphoglucosamine mutase OS=Salmonella newport (strain SL254) GN=glmM PE=3 SV=1 gi\|168819640, gi... - gi\|205343376\|gb\|EDZ30140.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serovar W... gi\|168231901, gi... - gi\|205333884\|gb\|EDZ20648.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serovar K... gi\|205331079, gi... - gi\|205331079\|gb\|EDZ17843.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serovar 4... gi\|205337804, gi... - gi\|205337804\|gb\|EDZ24568.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serovar H... gi\|197289095, gi... - gi\|197289095\|gb\|EDY28464.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serovar S... GLMM_SALTI - Phosphoglucosamine mutase OS=Salmonella typhi GN=glmM PE=3 SV=1 GLMM_SALTY - Phosphoglucosamine mutase OS=Salmonella typhimurium GN=glmM PE=3 SV=1 lcl\|NC_016856.1_... - [gene=glmM] [protein=phosphoglucosamine mutase] [protein_id=YP_005239470.1] [location=complement(347... gi\|213865087 - gi\|213865087\|ref\|ZP_03387206.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serov... gi\|213645863 - gi\|213645863\|ref\|ZP_03375916.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serov... gi\|213052986 - gi\|213052986\|ref\|ZP_03345864.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serov... GLMM_SALTI - Phosphoglucosamine mutase OS=Salmonella typhi GN=glmM PE=3 SV=1 GLMM_SALEP - Phosphoglucosamine mutase OS=Salmonella enteritidis PT4 (strain P125109) GN=glmM PE=3 SV=1 gi\|213622800 - gi\|213622800\|ref\|ZP_03375583.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serov... gi\|213425428 - gi\|213425428\|ref\|ZP_03358178.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serov... gi\|16762056 - gi\|16762056\|ref\|NP_457673.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serovar ... GLMM_SALDC - Phosphoglucosamine mutase OS=Salmonella dublin (strain CT_02021853) GN=glmM PE=3 SV=1 gi\|197261662, gi... - gi\|197261662\|ref\|ZP_03161736.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serov... GLMM_SALTY - Phosphoglucosamine mutase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=glmM PE... GLMM_SALG2 - Phosphoglucosamine mutase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=glmM PE=3 SV=1 gi\|29139179, gi\|... - gi\|29143545\|ref\|NP_806887.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serovar ... gi\|200388140, gi... - gi\|200388140\|ref\|ZP_03214752.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serov... gi\|194459091, gi... - gi\|194472727\|ref\|ZP_03078711.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serov... GLMM_SALHS - Phosphoglucosamine mutase OS=Salmonella heidelberg (strain SL476) GN=glmM PE=3 SV=1 GLMM_SALA4 - Phosphoglucosamine mutase OS=Salmonella agona (strain SL483) GN=glmM PE=3 SV=1 GLMM_SALSV - Phosphoglucosamine mutase OS=Salmonella schwarzengrund (strain CVM19633) GN=glmM PE=3 SV=1 GLMM_SALPB - Phosphoglucosamine mutase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=glmM PE=3 SV=1 GLMM_SALPB - Phosphoglucosamine mutase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=glmM PE=3 SV=1 GLMM_SALTY - Phosphoglucosamine mutase OS=Salmonella typhimurium GN=glmM PE=3 SV=1 gi\|238910087 - gi\|238910087\|ref\|ZP_04653924.1\| phosphoglucosamine mutase [Salmonella enterica subsp. enterica serov...	478.0	[0..1]	[445..1]
GLMM_SALCH - Phosphoglucosamine mutase OS=Salmonella choleraesuis (strain SC-B67) GN=glmM PE=3 SV=1 GLMM_SALCH - Phosphoglucosamine mutase OS=Salmonella choleraesuis GN=glmM PE=3 SV=1 GLMM_SALPC - Phosphoglucosamine mutase OS=Salmonella paratyphi C (strain RKS4594) GN=glmM PE=3 SV=1 GLMM_SALCH - Phosphoglucosamine mutase OS=Salmonella choleraesuis GN=glmM PE=3 SV=1	478.0	[0..1]	[445..1]
GLMM_PSEPK - Phosphoglucosamine mutase OS=Pseudomonas putida (strain KT2440) GN=glmM PE=3 SV=1	478.0	[0..3]	[445..2]
GLMM_ECO55 - Phosphoglucosamine mutase OS=Escherichia coli (strain 55989 / EAEC) GN=glmM PE=3 SV=1 gi\|75239257, gi\|... - gi\|75239257\|ref\|ZP_00723228.1\| COG1109: Phosphomannomutase [Escherichia coli E110019], gi\|193067499\|...	478.0	[0..1]	[445..1]
GLMM_SALPA - Phosphoglucosamine mutase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=glmM PE=3 SV=1 GLMM_SALPK - Phosphoglucosamine mutase OS=Salmonella paratyphi A (strain AKU_12601) GN=glmM PE=3 SV=1 GLMM_SALPA - Phosphoglucosamine mutase OS=Salmonella paratyphi A GN=glmM PE=3 SV=1	477.0	[0..1]	[445..1]
GLMM_ALTMD - Phosphoglucosamine mutase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=glmM PE=3 SV...	477.0	[0..1]	[445..1]

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Predicted Domain #1

Region A:
Residues: [1-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRKYFGTD GIRGRVGDAP ITPDFVLKLG WAAGKVLARH GSRKIIIGKD TRISGYMLES  60
   61 ALEAGLAAAG LSALFTGPMP TPAVAYLTRT FRAEAGIVIS ASHNPFYDNG IKFFSIDGTK 120
  121 LPDAVEEAIE AEMEKEISCV DSAELGKASR IVDAAGRYIE FCKATFPNEL SLSELKIVVD 180
  181 CANGATYHIA PNVLRELGAN VIAIGCEPNG VNINAEVGAT DVRALQARVL AEKADLGIAF 240
  241 DGDGDRVIMV DHEGNKVDGD QIMYIIAREG LRQGQLRGGA VGTLMSNMGL ELALKQLGIP 300
  301 FARAKVGDRY VLEKMQEKGW RIGAENSGHV ILLDKTTTGD GIVAGLQVLA AMARNHMSLH 360
  361 DLCSGMKMFP QILVNVRYTA GSGDPLEHES VKAVTAEVEA ALGNRGRVLL RKSGTEPLIR 420
  421 VMVEGEDEAQ VTEFAHRIAD AVKAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	1wqaA
Description:	Crystal Structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with Mg2+
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits