YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24113871, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24113871, gi|....

Description	E-value	Query Range	Subject Range
gi\|83716320, gi\|... - gi\|83716320\|ref\|YP_439609.1\| DoxD-like family protein [Burkholderia thailandensis E264], gi\|83650145...	129.0	[0..6]	[163..24]
gi\|218559463, gi... - gi\|218559463\|ref\|YP_002392376.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218428222, gi... - gi\|218690658\|ref\|YP_002398870.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|226901416, gi... - gi\|237705050\|ref\|ZP_04535531.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91211866, gi\|... - gi\|91211866\|ref\|YP_541852.1\| hypothetical protein UTI89_C2861 [Escherichia coli UTI89], gi\|91073440\|... gi\|117624765, gi... - gi\|117624765\|ref\|YP_853678.1\| hypothetical protein APECO1_3988 [Escherichia coli APEC O1], gi\|115513...	121.0	[0..10]	[164..1]
gi\|13362880 - gi\|13362880\|dbj\|BAB36832.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|13362880 - gi\|13362880\|dbj\|BAB36832.1\| hypothetical protein [Escherichia coli O157:H7] gi\|209763112, gi... - pir\|\|D85899 hypothetical protein yphA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12516949, gi\|... - gi\|15803069\|ref\|NP_289099.1\| hypothetical protein Z3815 [Escherichia coli O157:H7 EDL933], gi\|125169... gi\|218706046, gi... - gi\|218706046\|ref\|YP_002413565.1\| conserved hypothetical protein; putative inner membrane protein [Es...	121.0	[0..10]	[164..1]
gi\|91691549, gi\|... - gi\|91778889\|ref\|YP_554097.1\| hypothetical protein Bxe_B1209 [Burkholderia xenovorans LB400], gi\|9169...	121.0	[0..28]	[164..1]
gi\|81246404, gi\|... - gi\|82544993\|ref\|YP_408940.1\| hypothetical protein SBO_2569 [Shigella boydii Sb227], gi\|81246404\|gb\|A...	120.0	[0..10]	[164..1]
gi\|72610011, gi\|... - gi\|74017383\|ref\|ZP_00688007.1\| Surfeit locus 4-related [Burkholderia ambifaria AMMD], gi\|72610011\|gb...	118.0	[0..28]	[164..1]
gi\|53716816, gi\|... - gi\|53716816\|ref\|YP_105875.1\| DoxD-like family protein [Burkholderia mallei ATCC 23344], gi\|52422786\|... gi\|121224409, gi... - gi\|121596611\|ref\|YP_989825.1\| DoxD-like family protein [Burkholderia mallei SAVP1], gi\|121224409\|gb\|...	113.0	[0..6]	[163..10]
gi\|254215787, gi... - gi\|254264785\|ref\|ZP_04955650.1\| DoxX family protein [Burkholderia pseudomallei 1710a], gi\|254215787\|... gi\|76817803, gi\|... - gi\|76817803\|ref\|YP_337741.1\| DoxD-like family protein [Burkholderia pseudomallei 1710b], gi\|76582276...	112.0	[0..6]	[163..10]
gi\|82713422, gi\|... - gi\|82739520\|ref\|ZP_00902320.1\| SURF4 domain protein [Pseudomonas putida F1], gi\|82713422\|gb\|EAP48536...	111.0	[0..28]	[164..19]
gi\|82778430, gi\|... - gi\|82778430\|ref\|YP_404779.1\| hypothetical protein SDY_3290 [Shigella dysenteriae Sd197], gi\|81242578...	110.0	[0..18]	[163..39]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGAWRGARV CITFKSHYLA KGLVMNTLRY FDFGAARPVL LLIARIAVVL IFIIFGFPKM  60
   61 MGFDGTVQYM ASLGAPMPML AAIIAVVMEV PAAILIVLGF FTRPLAVLFI FYTLGTAVIG 120
  121 HHYWDMTGDA VGPNMINFWK NVSIAGAFLL LAITGPGAIS LDRR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.508638
Match:	PF07681.3
Description:	No description for PF07681.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.870	0.333	integral to membrane	a.47.2	t-snare proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits