YRC Public Data Repository - Protein Structure Prediction

Protein:	DCP_ECOLI
Organism:	Escherichia coli
Length:	681 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|28805052, gi\|... - gi\|28896844\|ref\|NP_796449.1\| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633], gi\|28805052\|db... gi\|28805052 - gi\|28805052\|dbj\|BAC58333.1\| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633]	686.0	[0..3]	[679..1]
gi\|91224906, gi\|... - gi\|91224906\|ref\|ZP_01260165.1\| oligopeptidase A [Vibrio alginolyticus 12G01], gi\|91190152\|gb\|EAS7642...	685.0	[0..3]	[679..1]
gi\|75856446, gi\|... - gi\|75856446\|ref\|ZP_00764074.1\| COG0339: Zn-dependent oligopeptidases [Vibrio sp. Ex25], gi\|254228516...	681.0	[0..3]	[679..1]
gi\|227012035, gi... - gi\|75828182\|ref\|ZP_00757617.1\| COG0339: Zn-dependent oligopeptidases [Vibrio cholerae O395], gi\|2271... gi\|75816535 - gi\|75816535\|ref\|ZP_00747002.1\| COG0339: Zn-dependent oligopeptidases [Vibrio cholerae V52]	680.0	[0..3]	[679..1]
Q664F3\|Q664F3_YERPS - Oligopeptidase A - Yersinia pseudotuberculosis gi\|51598106, gi\|... - gi\|51598106\|ref\|YP_072297.1\| oligopeptidase A [Yersinia pseudotuberculosis IP 32953], gi\|51591388\|em...	680.0	[0..3]	[679..1]
gi\|254222791, gi... - gi\|75824528\|ref\|ZP_00753979.1\| COG0339: Zn-dependent oligopeptidases [Vibrio cholerae RC385], gi\|254...	679.0	[0..3]	[679..1]
gi\|37196990, gi\|... - gi\|37678251\|ref\|NP_932860.1\| Zn-dependent oligopeptidase [Vibrio vulnificus YJ016], gi\|37196990\|dbj\|...	679.0	[0..3]	[679..23]
gi\|153818548, gi... - gi\|153818548\|ref\|ZP_01971215.1\| oligopeptidase A [Vibrio cholerae NCTC 8457], gi\|126510887\|gb\|EAZ734... gi\|153821596, gi... - gi\|153821596\|ref\|ZP_01974263.1\| oligopeptidase A [Vibrio cholerae B33], gi\|126520883\|gb\|EAZ78106.1\| ... gi\|254847022, gi... - gi\|75830234\|ref\|ZP_00759516.1\| COG0339: Zn-dependent oligopeptidases [Vibrio cholerae MO10], gi\|2548... gi\|15640218, gi\|... - gi\|9654593\|gb\|AAF93364.1\| oligopeptidase A [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|156402... gi\|11355739 - pir\|\|C82353 oligopeptidase A VC0188 [imported] - Vibrio cholerae (strain N16961 serogroup O1)	679.0	[0..3]	[679..1]
gi\|116220638, gi... - gi\|75819942\|ref\|ZP_00750002.1\| COG0339: Zn-dependent oligopeptidases [Vibrio cholerae V51], gi\|25422...	678.0	[0..3]	[679..1]
gi\|165915120, gi... - gi\|89105112\|ref\|ZP_01177638.1\| COG0339: Zn-dependent oligopeptidases [Yersinia pestis biovar Orienta... gi\|229691095, gi... - gi\|229841756\|ref\|ZP_04461912.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. India 195],... gi\|108781706, gi... - gi\|108809793\|ref\|YP_653709.1\| oligopeptidase A [Yersinia pestis Antiqua], gi\|108781706\|gb\|ABG15764.1... gi\|229696039, gi... - gi\|229839673\|ref\|ZP_04459832.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. PEXU2], gi\|... gi\|229678412, gi... - gi\|229904294\|ref\|ZP_04519405.1\| oligopeptidase A [Yersinia pestis Nepal516], gi\|229678412\|gb\|EEO7451... gi\|229706515, gi... - gi\|229836447\|ref\|ZP_04456614.1\| oligopeptidase A [Yersinia pestis Pestoides A], gi\|229706515\|gb\|EEO9... gi\|162353098, gi... - gi\|77635480\|ref\|ZP_00797564.1\| COG0339: Zn-dependent oligopeptidases [Yersinia pestis Angola], gi\|16... gi\|165926985, gi... - gi\|165926985\|ref\|ZP_02222817.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. F1991016], ... gi\|166009704, gi... - gi\|166009704\|ref\|ZP_02230602.1\| oligopeptidase A [Yersinia pestis biovar Antiqua str. E1979001], gi\|... gi\|166205336, gi... - gi\|166213395\|ref\|ZP_02239430.1\| oligopeptidase A [Yersinia pestis biovar Antiqua str. B42003004], gi... gi\|150261069, gi... - gi\|150261069\|ref\|ZP_01917797.1\| oligopeptidase A [Yersinia pestis CA88-4125], gi\|149290477\|gb\|EDM405... gi\|167400663, gi... - gi\|167400663\|ref\|ZP_02306172.1\| oligopeptidase A [Yersinia pestis biovar Antiqua str. UG05-0454], gi... gi\|167420890, gi... - gi\|167420890\|ref\|ZP_02312643.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. MG05-1020],... gi\|167426620, gi... - gi\|167426620\|ref\|ZP_02318373.1\| oligopeptidase A [Yersinia pestis biovar Mediaevalis str. K1973002],... gi\|145212287, gi... - gi\|145600591\|ref\|YP_001164667.1\| oligopeptidase A [Yersinia pestis Pestoides F], gi\|145212287\|gb\|ABP... gi\|21960848, gi\|... - gi\|22127726\|ref\|NP_671149.1\| oligopeptidase A [Yersinia pestis KIM], gi\|21960848\|gb\|AAM87400.1\|AE013... gi\|25319701 - pir\|\|AH0483 oligopeptidase A (EC 3.4.24.70) [imported] - Yersinia pestis (strain CO92) gi\|15981883, gi\|... - gi\|218930970\|ref\|YP_002348845.1\| oligopeptidase A [Yersinia pestis CO92], gi\|16124102\|ref\|NP_407415.... gi\|45443086, gi\|... - gi\|45443086\|ref\|NP_994625.1\| oligopeptidase A [Yersinia pestis biovar Microtus str. 91001], gi\|45437...	678.0	[0..3]	[679..1]

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Predicted Domain #1

Region A:
Residues: [1-681]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTMNPFLVQ STLPYLAPHF DQIANHHYRP AFDEGMQQKR AEIAAIALNP QMPDFNNTIL  60
   61 ALEQSGELLT RVTSVFFAMT AAHTNDELQR LDEQFSAELA ELANDIYLNG ELFARVDAVW 120
  121 QRRESLGLDS ESIRLVEVIH QRFVLAGAKL AQADKAKLKV LNTEAATLTS QFNQRLLAAN 180
  181 KSGGLVVNDI AQLAGMSEQE IALAAEAARE KGLDNKWLIP LLNTTQQPAL AEMRDRATRE 240
  241 KLFIAGWTRA EKNDANDTRA IIQRLVEIRA QQATLLGFPH YAAWKIADQM AKTPEAALNF 300
  301 MREIVPAARQ RASDELASIQ AVIDKQQGGF SAQPWDWAFY AEQVRREKFD LDEAQLKPYF 360
  361 ELNTVLNEGV FWTANQLFGI KFVERFDIPV YHPDVRVWEI FDHNGVGLAL FYGDFFARDS 420
  421 KSGGAWMGNF VEQSTLNKTH PVIYNVCNYQ KPAAGEPALL LWDDVITLFH EFGHTLHGLF 480
  481 ARQRYATLSG TNTPRDFVEF PSQINEHWAT HPQVFARYAR HYQSGAAMPD ELQQKMRNAS 540
  541 LFNKGYEMSE LLSAALLDMR WHCLEENEAM QDVDDFELRA LVAENMDLPA IPPRYRSSYF 600
  601 AHIFGGGYAA GYYAYLWTQM LADDGYQWFV EQGGLTRENG LRFREAILSR GNSEDLERLY 660
  661 RQWRGKAPKI MPMLQHRGLN I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	162.0
Match:	1y791
Description:	Crystal Structure of the E.coli Dipeptidyl Carboxypeptidase Dcp in Complex with a Peptidic Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits