YRC Public Data Repository - Protein Structure Prediction

Protein:	YDCE_ECOLI
Organism:	Escherichia coli
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDCE_ECOLI.

Description	E-value	Query Range	Subject Range
YOTL_DICD3 - Probable tautomerase K2 OS=Dickeya dadantii (strain 3937) PE=3 SV=3 gi\|495248, gi\|10... - gi\|495248\|emb\|CAA52960.1\| unnamed protein product [Erwinia chrysanthemi], gi\|1176508\|sp\|P45418\|YOTL_...	99.0	[0..1]	[70..1]
gi\|77631046 - gi\|77631046\|ref\|ZP_00793632.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	98.0	[0..1]	[63..5]
gi\|77978637 - gi\|77978637\|ref\|ZP_00834063.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	97.0	[0..1]	[64..5]
gi\|89105100 - gi\|89105100\|ref\|ZP_01177626.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo... gi\|77635492 - gi\|77635492\|ref\|ZP_00797576.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	97.0	[0..1]	[63..5]
gi\|145600607, gi... - gi\|145600607\|ref\|YP_001164683.1\| tautomerase [Yersinia pestis Pestoides F], gi\|145212303\|gb\|ABP41710... gi\|21960830, gi\|... - gi\|22127710\|ref\|NP_671133.1\| hypothetical protein y3839 [Yersinia pestis KIM], gi\|21960830\|gb\|AAM873... gi\|108777447, gi... - gi\|108813799\|ref\|YP_649566.1\| tautomerase [Yersinia pestis Nepal516], gi\|108777447\|gb\|ABG19966.1\| ta... gi\|45443101, gi\|... - gi\|45443101\|ref\|NP_994640.1\| hypothetical protein YP_3352 [Yersinia pestis biovar Microtus str. 9100... gi\|108809808, gi... - gi\|108809808\|ref\|YP_653724.1\| putative tautomerase [Yersinia pestis Antiqua], gi\|108781721\|gb\|ABG157...	97.0	[0..1]	[63..46]
gi\|51598119, gi\|... - gi\|51598119\|ref\|YP_072310.1\| tautomerase enzyme [Yersinia pseudotuberculosis IP 32953], gi\|51591401\|... Q664E0\|Q664E0_YERPS - Possible Tautomerase enzyme - Yersinia pseudotuberculosis	97.0	[0..1]	[63..46]
gi\|238719108, gi... - gi\|77963002\|ref\|ZP_00826816.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	97.0	[0..1]	[64..5]
gi\|238783922, gi... - gi\|77959596\|ref\|ZP_00823614.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	97.0	[0..1]	[64..5]
gi\|115349595, gi... - gi\|218930984\|ref\|YP_002348859.1\| putative tautomerase [Yersinia pestis CO92], gi\|16124116\|ref\|NP_407... gi\|167467304 - gi\|167467304\|ref\|ZP_02332008.1\| possible Tautomerase enzyme [Yersinia pestis FV-1] gi\|25324080 - pir\|\|AF0485 probable tautomerase YPO3989 [imported] - Yersinia pestis (strain CO92) gi\|167054381, gi... - gi\|167426606\|ref\|ZP_02318359.1\| 4-oxalocrotonate tautomerase family enzyme [Yersinia pestis biovar M... gi\|167421047, gi... - gi\|167421047\|ref\|ZP_02312800.1\| 4-oxalocrotonate tautomerase family enzyme [Yersinia pestis biovar O... gi\|167049904, gi... - gi\|167400536\|ref\|ZP_02306045.1\| 4-oxalocrotonate tautomerase family enzyme [Yersinia pestis biovar A... gi\|150261055, gi... - gi\|150261055\|ref\|ZP_01917783.1\| putative tautomerase [Yersinia pestis CA88-4125], gi\|149290463\|gb\|ED... gi\|186700364, gi... - gi\|186897338\|ref\|YP_001874450.1\| 4-oxalocrotonate tautomerase [Yersinia pseudotuberculosis PB1/+], g... gi\|169748897, gi... - gi\|170022363\|ref\|YP_001718868.1\| 4-oxalocrotonate tautomerase [Yersinia pseudotuberculosis YPIII], g... gi\|162419868, gi... - gi\|162419868\|ref\|YP_001608358.1\| 4-oxalocrotonate tautomerase [Yersinia pestis Angola], gi\|162352683... gi\|229839690, gi... - gi\|229839690\|ref\|ZP_04459849.1\| putative tautomerase [Yersinia pestis biovar Orientalis str. PEXU2],... gi\|229706498, gi... - gi\|229836430\|ref\|ZP_04456597.1\| putative tautomerase [Yersinia pestis Pestoides A], gi\|229706498\|gb\|... gi\|166213452, gi... - gi\|166213452\|ref\|ZP_02239487.1\| 4-oxalocrotonate tautomerase family enzyme [Yersinia pestis biovar A... gi\|229904311, gi... - gi\|229904311\|ref\|ZP_04519422.1\| putative tautomerase [Yersinia pestis Nepal516], gi\|229678429\|gb\|EEO... gi\|165991610, gi... - gi\|166009688\|ref\|ZP_02230586.1\| 4-oxalocrotonate tautomerase family enzyme [Yersinia pestis biovar A... gi\|229841773, gi... - gi\|229841773\|ref\|ZP_04461929.1\| putative tautomerase [Yersinia pestis biovar Orientalis str. India 1... gi\|165915201, gi... - gi\|165936959\|ref\|ZP_02225525.1\| 4-oxalocrotonate tautomerase family enzyme [Yersinia pestis biovar O... gi\|165926964, gi... - gi\|165926964\|ref\|ZP_02222796.1\| 4-oxalocrotonate tautomerase family enzyme [Yersinia pestis biovar O...	96.0	[0..1]	[63..1]
gi\|94416392 - gi\|94416392\|ref\|ZP_01296218.1\| hypothetical protein PaerP_01001714 [Pseudomonas aeruginosa PA7]	96.0	[0..1]	[66..3]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHIDIKCFP RELDEQQKAA LAADITDVII RHLNSKDSSI SIALQQIQPE SWQAIWDAEI  60
   61 APQMEALIKK PGYSMNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.045757
Match:	1gyjA
Description:	4-oxalocrotonate tautomerase homologue YdcE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits