YRC Public Data Repository - Protein Structure Prediction

Protein:	FLGK_ECOLI
Organism:	Escherichia coli
Length:	547 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLGK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|187429732, gi... - gi\|75175790\|ref\|ZP_00695985.1\| COG1256: Flagellar hook-associated protein [Shigella boydii BS512], g...	243.0	[0..1]	[547..1]
gi\|191168469, gi... - gi\|75228350\|ref\|ZP_00715000.1\| COG1256: Flagellar hook-associated protein [Escherichia coli B7A], gi...	243.0	[0..1]	[547..1]
gi\|209918336, gi... - gi\|209918336\|ref\|YP_002292420.1\| flagellar hook-associated protein FlgK [Escherichia coli SE11], gi\|... gi\|218360428, gi... - gi\|218553660\|ref\|YP_002386573.1\| flagellar hook-associated protein FlgK [Escherichia coli IAI1], gi\|... gi\|157159090, gi... - gi\|75190140\|ref\|ZP_00703407.1\| COG1256: Flagellar hook-associated protein [Escherichia coli E24377A]...	243.0	[0..1]	[547..1]
gi\|74311643, gi\|... - gi\|74311643\|ref\|YP_310062.1\| flagellar hook-associated protein FlgK [Shigella sonnei Ss046], gi\|7385...	243.0	[0..1]	[547..1]
gi\|193064539, gi... - gi\|75257518\|ref\|ZP_00729021.1\| COG1256: Flagellar hook-associated protein [Escherichia coli E22], gi... gi\|75210353, gi\|... - gi\|75210353\|ref\|ZP_00710515.1\| COG1256: Flagellar hook-associated protein [Escherichia coli B171], g...	243.0	[0..1]	[547..1]
gi\|218364733, gi... - gi\|218557964\|ref\|YP_002390877.1\| flagellar hook-associated protein FlgK [Escherichia coli S88], gi\|2... gi\|115512392, gi... - gi\|117623268\|ref\|YP_852181.1\| flagellar hook-associated protein FlgK [Escherichia coli APEC O1], gi\|... gi\|237706932, gi... - gi\|237706932\|ref\|ZP_04537413.1\| hook-filament junction protein FlgK [Escherichia sp. 3_2_53FAA], gi\|... gi\|91210234, gi\|... - gi\|91210234\|ref\|YP_540220.1\| flagellar hook-associated protein FlgK [Escherichia coli UTI89], gi\|910...	242.0	[0..1]	[547..1]
gi\|81245864, gi\|... - gi\|82544453\|ref\|YP_408400.1\| flagellar hook-associated protein FlgK [Shigella boydii Sb227], gi\|8124...	242.0	[0..1]	[547..1]
gi\|251784613, gi... - gi\|251784613\|ref\|YP_002998917.1\| hypothetical protein B21_01086 [Escherichia coli BL21], gi\|24237688... gi\|253973089, gi... - gi\|254161188\|ref\|YP_003044296.1\| flagellar hook-associated protein K [Escherichia coli B str. REL606... gi\|194423057, gi... - gi\|83586384\|ref\|ZP_00925018.1\| COG1256: Flagellar hook-associated protein [Escherichia coli 101-1], ... gi\|254287996, gi... - gi\|254287996\|ref\|YP_003053744.1\| flagellar hook-associated protein K [Escherichia coli BL21(DE3)], g...	242.0	[0..1]	[547..1]
gi\|124532256, gi... - gi\|124532256\|ref\|ZP_01702175.1\| flagellar hook-associated protein FlgK [Escherichia coli B], gi\|1244... gi\|75195266, gi\|... - gi\|75195266\|ref\|ZP_00705336.1\| COG1256: Flagellar hook-associated protein [Escherichia coli HS], gi\|... gi\|169755450, gi... - gi\|170020522\|ref\|YP_001725476.1\| flagellar hook-associated protein FlgK [Escherichia coli ATCC 8739]...	242.0	[0..1]	[547..1]
gi\|227886560, gi... - gi\|227886560\|ref\|ZP_04004365.1\| flagellar hook-associated protein FlgK [Escherichia coli 83972], gi\|... gi\|26247222, gi\|... - gi\|26247222\|ref\|NP_753262.1\| flagellar hook-associated protein FlgK [Escherichia coli CFT073], gi\|26...	242.0	[0..1]	[547..1]

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Predicted Domain #1

Region A:
Residues: [1-547]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLINNAMS GLNAAQAALN TASNNISSYN VAGYTRQTTI MAQANSTLGA GGWVGNGVYV  60
   61 SGVQREYDAF ITNQLRAAQT QSSGLTARYE QMSKIDNMLS TSTSSLATQM QDFFTSLQTL 120
  121 VSNAEDPAAR QALIGKSEGL VNQFKTTDQY LRDQDKQVNI AIGASVDQIN NYAKQIASLN 180
  181 DQISRLTGVG AGASPNNLLD QRDQLVSELN QIVGVEVSVQ DGGTYNITMA NGYSLVQGST 240
  241 ARQLAAVPSS ADPSRTTVAY VDGTAGNIEI PEKLLNTGSL GGILTFRSQD LDQTRNTLGQ 300
  301 LALAFAEAFN TQHKAGFDAN GDAGEDFFAI GKPAVLQNTK NKGDVAIGAT VTDASAVLAT 360
  361 DYKISFDNNQ WQVTRLASNT TFTVTPDANG KVAFDGLELT FTGTPAVNDS FTLKPVSDAI 420
  421 VNMDVLITDE AKIAMASEED AGDSDNRNGQ ALLDLQSNSK TVGGAKSFND AYASLVSDIG 480
  481 NKTATLKTSS ATQGNVVTQL SNQQQSISGV NLDEEYGNLQ RFQQYYLANA QVLQTANAIF 540
  541 DALINIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2d4yA
Description:	No description for 2d4yA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits