YRC Public Data Repository - Protein Structure Prediction

Protein:	FLGE_ECOLI
Organism:	Escherichia coli
Length:	402 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLGE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|36785270, gi\|... - gi\|37525841\|ref\|NP_929185.1\| flagellar hook protein FlgE [Photorhabdus luminescens subsp. laumondii ...	259.0	[0..1]	[402..1]
gi\|24112485, gi\|... - gi\|24112485\|ref\|NP_706995.1\| flagellar hook protein [Shigella flexneri 2a str. 301], gi\|24051371\|gb\|...	254.0	[0..1]	[402..241]
gi\|42524754, gi\|... - gi\|42524754\|ref\|NP_970134.1\| hypothetical protein Bd3395 [Bdellovibrio bacteriovorus HD100], gi\|3957...	249.0	[0..2]	[402..6]
gi\|82544458, gi\|... - gi\|82544458\|ref\|YP_408405.1\| flagellar hook protein FlgE [Shigella boydii Sb227], gi\|81245869\|gb\|ABB...	248.0	[0..1]	[402..1]
gi\|170020528, gi... - gi\|170020528\|ref\|YP_001725482.1\| flagellar hook protein FlgE [Escherichia coli ATCC 8739], gi\|169755... gi\|157160603, gi... - gi\|75195260\|ref\|ZP_00705330.1\| COG1749: Flagellar hook protein FlgE [Escherichia coli HS], gi\|157160... gi\|124531135, gi... - gi\|124531135\|ref\|ZP_01701490.1\| flagellar basal body FlaE domain protein [Escherichia coli B], gi\|12...	248.0	[0..1]	[402..1]
gi\|82777309, gi\|... - gi\|82777309\|ref\|YP_403658.1\| flagellar hook protein FlgE [Shigella dysenteriae Sd197], gi\|81241457\|g...	247.0	[0..1]	[402..1]
gi\|187431236, gi... - gi\|75175797\|ref\|ZP_00695992.1\| COG1749: Flagellar hook protein FlgE [Shigella boydii BS512], gi\|1877...	246.0	[0..1]	[402..1]
gi\|110805093, gi... - gi\|110805093\|ref\|YP_688613.1\| flagellar hook protein FlgE [Shigella flexneri 5 str. 8401], gi\|110614...	245.0	[0..1]	[402..1]
gi\|227836770, gi... - gi\|227886566\|ref\|ZP_04004371.1\| flagellar hook protein FlgE [Escherichia coli 83972], gi\|227836770\|g... gi\|26107617, gi\|... - gi\|26247216\|ref\|NP_753256.1\| flagellar hook protein FlgE [Escherichia coli CFT073], gi\|26107617\|gb\|A...	244.0	[0..1]	[402..1]
gi\|205322416, gi... - gi\|205322416\|gb\|EDZ10255.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=flgE] [protein=flagellar hook protein FlgE] [protein_id=YP_005236932.1] [location=1217971..121... FLGE_SALTI - Flagellar hook protein FlgE OS=Salmonella typhi GN=flgE PE=3 SV=2 gi\|62179694, gi\|... - gi\|62179694\|ref\|YP_216111.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serova... gi\|213424680 - gi\|213424680\|ref\|ZP_03357445.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica ser... FLGE_SALTY - Flagellar hook protein flgE OS=Salmonella typhimurium GN=flgE PE=1 SV=2 gi\|213582037 - gi\|213582037\|ref\|ZP_03363863.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica ser... FLGE_SALTY - Flagellar hook protein FlgE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=flgE ... gi\|213648926 - gi\|213648926\|ref\|ZP_03378979.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica ser... gi\|29137806, gi\|... - gi\|29142176\|ref\|NP_805518.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serova... gi\|213865505 - gi\|213865505\|ref\|ZP_03387624.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica ser... gi\|16760053 - gi\|16760053\|ref\|NP_455670.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serova... gi\|204930842, gi... - gi\|204930842\|ref\|ZP_03221715.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica ser... gi\|205272866, gi... - gi\|205353085\|ref\|YP_002226886.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica se... gi\|207857315, gi... - gi\|207857315\|ref\|YP_002243966.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica se... gi\|213161844 - gi\|213161844\|ref\|ZP_03347554.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica ser... gi\|194442954, gi... - gi\|194442954\|ref\|YP_002040431.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica se... gi\|197213902, gi... - gi\|197250199\|ref\|YP_002146866.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica se... gi\|197265088, gi... - gi\|197265088\|ref\|ZP_03165162.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica ser... gi\|197939687, gi... - gi\|198245171\|ref\|YP_002215960.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica se... gi\|205328054, gi... - gi\|205328054\|gb\|EDZ14818.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar... gi\|168264030, gi... - gi\|205347322\|gb\|EDZ33953.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar... gi\|168467129, gi... - gi\|195630413\|gb\|EDX49039.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar... gi\|168822620, gi... - gi\|205341012\|gb\|EDZ27776.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica serovar... FLGE_SALTY - Flagellar hook protein flgE OS=Salmonella typhimurium GN=flgE PE=1 SV=2 gi\|213976714 - gi\|213976714\|ref\|ZP_03403973.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica ser... gi\|214002346 - gi\|214002346\|ref\|ZP_03413081.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica ser... gi\|224584319, gi... - gi\|224584319\|ref\|YP_002638117.1\| flagellar hook protein [Salmonella enterica subsp. enterica serovar... FLGE_SALTI - Flagellar hook protein flgE OS=Salmonella typhi GN=flgE PE=3 SV=2 gi\|238911003 - gi\|238911003\|ref\|ZP_04654840.1\| flagellar hook protein FlgE [Salmonella enterica subsp. enterica ser...	244.0	[0..1]	[402..1]

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Predicted Domain #1

Region A:
Residues: [1-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSQAVSGL NAAATNLDVI GNNIANSATY GFKSGTASFA DMFAGSKVGL GVKVAGITQD  60
   61 FTDGTTTNTG RGLDVAISQN GFFRLVDSNG SVFYSRNGQF KLDENRNLVN MQGLQLTGYP 120
  121 ATGTPPTIQQ GANPTNISIP NTLMAAKTTT TASMQINLNS SDPLPTVTPF SASNADSYNK 180
  181 KGSVTVFDSQ GNAHDMSVYF VKTGDNNWQV YTQDSSDPNS IAKTATTLEF NANGTLVDGA 240
  241 MANNIATGAI NGAEPATFSL SFLNSMQQNT GANNIVATTQ NGYKPGDLVS YQINDDGTVV 300
  301 GNYSNEQTQL LGQIVLANFA NNEGLASEGD NVWSATQSSG VALLGTAGTG NFGTLTNGAL 360
  361 EASNVDLSKE LVNMIVAQRN YQSNAQTIKT QDQILNTLVN LR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.30103
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits