YRC Public Data Repository - Protein Structure Prediction

Protein:	YBCC_ECOLI
Organism:	Escherichia coli
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBCC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|30910925, gi\|... - gi\|49523597\|emb\|CAD88815.1\| putative exonuclease [Phage BP-4795], gi\|31044236\|ref\|NP_851950.1\| hypot...	144.0	[0..1]	[87..140]
gi\|91071876, gi\|... - gi\|91210302\|ref\|YP_540288.1\| putative exonuclease encoded by prophage CP-933K [Escherichia coli UTI8... gi\|189371571, gi... - gi\|189371571\|gb\|EDU89987.1\| exonuclease [Escherichia coli O157:H7 str. EC869], gi\|168788664\|ref\|ZP_0... gi\|209361115, gi... - gi\|209447136\|ref\|YP_002274221.1\| exonuclease [Stx2-converting phage 1717], gi\|209361115\|gb\|ACI43108.... gi\|218364796, gi... - gi\|218558027\|ref\|YP_002390940.1\| exonuclease from phage origin [Escherichia coli S88], gi\|218364796\|... gi\|117623324, gi... - gi\|117623324\|ref\|YP_852237.1\| putative exonuclease encoded by prophage CP-933K [Escherichia coli APE... gi\|237706870, gi... - gi\|237706870\|ref\|ZP_04537351.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	144.0	[0..1]	[87..140]
gi\|5881605, gi\|9... - gi\|9633409\|ref\|NP_050512.1\| exonuclease [Enterobacteria phage VT2-Sakai], gi\|5881605\|dbj\|BAA84296.1\|...	144.0	[0..1]	[87..140]
gi\|25301747 - pir\|\|F90775 exonuclease [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi\|209407383 - gi\|209407383\|emb\|CAQ81999.1\| exonuclease [Enterobacteria phage 2851] gi\|168799122, gi... - gi\|189378512\|gb\|EDU96928.1\| exonuclease [Escherichia coli O157:H7 str. EC508], gi\|168799122\|ref\|ZP_0... gi\|32128282, gi\|... - gi\|32171104\|ref\|NP_859348.1\| hypothetical protein Stx2IIp103 [Stx2 converting phage II], gi\|32128282... gi\|189366629, gi... - gi\|189366629\|gb\|EDU85045.1\| exonuclease [Escherichia coli O157:H7 str. EC4501], gi\|168763260\|ref\|ZP_... gi\|32128115, gi\|... - gi\|32170937\|ref\|NP_859182.1\| hypothetical protein Stx1p104 [Stx1 converting phage], gi\|32128115\|dbj\|... gi\|13360634, gi\|... - gi\|7649834\|dbj\|BAA94112.1\| exonuclease [Enterobacteria phage VT2-Sakai], gi\|15830428\|ref\|NP_309201.1... gi\|13360634, gi\|... - gi\|15830428\|ref\|NP_309201.1\| exonuclease [Escherichia coli O157:H7 str. Sakai], gi\|13360634\|dbj\|BAB3... gi\|7649834\|dbj\|B... - exonuclease [Escherichia coli O157:H7]	144.0	[0..1]	[87..140]
gi\|192956173, gi... - gi\|75234692\|ref\|ZP_00719012.1\| hypothetical protein EcolE1_01003466 [Escherichia coli E110019], gi\|1...	143.0	[0..1]	[87..140]
gi\|2981724, gi\|2... - gi\|2981724\|pdb\|1AVQ\|C Chain C, Toroidal Structure Of Lambda Exonuclease Determined At 2.4 Angstroms,...	143.0	[0..1]	[87..142]
gi\|195936770 - gi\|195936770\|ref\|ZP_03082152.1\| exonuclease [Escherichia coli O157:H7 str. EC4024] gi\|208728285, gi... - gi\|208808484\|ref\|ZP_03250821.1\| exonuclease [Escherichia coli O157:H7 str. EC4206], gi\|208728285\|gb\|... gi\|208814792, gi... - gi\|208814792\|ref\|ZP_03255971.1\| exonuclease [Escherichia coli O157:H7 str. EC4045], gi\|208731440\|gb\|... gi\|208737524, gi... - gi\|208822039\|ref\|ZP_03262358.1\| exonuclease [Escherichia coli O157:H7 str. EC4042], gi\|208737524\|gb\|... gi\|187768130, gi... - gi\|187768130\|gb\|EDU31974.1\| exonuclease [Escherichia coli O157:H7 str. EC4196], gi\|168776471\|ref\|ZP_... gi\|13360268, gi\|... - gi\|15830063\|ref\|NP_308836.1\| exonuclease [Escherichia coli O157:H7 str. Sakai], gi\|13360268\|dbj\|BAB3... gi\|168779272, gi... - gi\|189002706\|gb\|EDU71692.1\| exonuclease [Escherichia coli O157:H7 str. EC4076], gi\|168779272\|ref\|ZP_... gi\|168786943, gi... - gi\|189373198\|gb\|EDU91614.1\| exonuclease [Escherichia coli O157:H7 str. EC869], gi\|168786943\|ref\|ZP_0... gi\|189376954, gi... - gi\|189376954\|gb\|EDU95370.1\| exonuclease [Escherichia coli O157:H7 str. EC508], gi\|168800784\|ref\|ZP_0... gi\|188015485, gi... - gi\|188015485\|gb\|EDU53607.1\| exonuclease [Escherichia coli O157:H7 str. EC4113], gi\|168750276\|ref\|ZP_... gi\|189355892, gi... - gi\|189355892\|gb\|EDU74311.1\| exonuclease [Escherichia coli O157:H7 str. EC4401], gi\|168757072\|ref\|ZP_... gi\|189366442, gi... - gi\|189366442\|gb\|EDU84858.1\| exonuclease [Escherichia coli O157:H7 str. EC4501], gi\|168763373\|ref\|ZP_... gi\|189363431, gi... - gi\|189363431\|gb\|EDU81850.1\| exonuclease [Escherichia coli O157:H7 str. EC4486], gi\|168767229\|ref\|ZP_... gi\|254791930, gi... - gi\|254791930\|ref\|YP_003076767.1\| putative exonuclease encoded by prophage CP-933K [Escherichia coli ... gi\|25301749, gi\|... - pir\|\|G85580 exonuclease Z0951 [similarity] - Escherichia coli (strain O157:H7, substrain EDL933), p... gi\|209396861, gi... - gi\|209396861\|ref\|YP_002269408.1\| exonuclease [Escherichia coli O157:H7 str. EC4115], gi\|209158261\|gb... gi\|217325879, gi... - gi\|217325879\|ref\|ZP_03441963.1\| exonuclease [Escherichia coli O157:H7 str. TW14588], gi\|217322100\|gb... gi\|12513713, gi\|... - gi\|15800487\|ref\|NP_286499.1\| putative exonuclease encoded by prophage CP-933K [Escherichia coli O157... gi\|13360268, gi\|... - gi\|15830063\|ref\|NP_308836.1\| exonuclease [Escherichia coli O157:H7], gi\|13360268\|dbj\|BAB34232.1\| exo...	142.0	[0..1]	[87..140]
gi\|75256357 - gi\|75256357\|ref\|ZP_00728027.1\| hypothetical protein EcolE2_01003683 [Escherichia coli E22] gi\|75209058, gi\|... - gi\|75209058\|ref\|ZP_00709316.1\| hypothetical protein EcolB_01003738 [Escherichia coli B171], gi\|19442...	142.0	[0..1]	[87..140]
gi\|191166553, gi... - gi\|75230272\|ref\|ZP_00716769.1\| hypothetical protein EcolB7_01001532 [Escherichia coli B7A], gi\|19116...	142.0	[0..1]	[87..140]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFRLGGFEA IKSAYMAQVQ YSMWVTRKDA WYFANYDPRM KREGLHYVVI ERNEKYMASF  60
   61 DEMVPEFIEK MDEALAEIGF VFGEQWR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1avqA
Description:	lambda exonuclease
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits