YRC Public Data Repository - Protein Structure Prediction

Protein:	PEPD_ECOLI
Organism:	Escherichia coli
Length:	485 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEPD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|166205684, gi... - gi\|166212897\|ref\|ZP_02238932.1\| aminoacyl-histidine dipeptidase [Yersinia pestis biovar Antiqua str.... gi\|149364927, gi... - gi\|149364927\|ref\|ZP_01886962.1\| aminoacyl-histidine dipeptidase [Yersinia pestis CA88-4125], gi\|1492... gi\|167051968, gi... - gi\|167399464\|ref\|ZP_02304988.1\| aminoacyl-histidine dipeptidase [Yersinia pestis biovar Antiqua str.... gi\|145600116, gi... - gi\|145600116\|ref\|YP_001164192.1\| aminoacyl-histidine dipeptidase [Yersinia pestis Pestoides F], gi\|1... gi\|166960609, gi... - gi\|167421690\|ref\|ZP_02313443.1\| aminoacyl-histidine dipeptidase [Yersinia pestis biovar Orientalis s... gi\|167423669, gi... - gi\|167423669\|ref\|ZP_02315422.1\| aminoacyl-histidine dipeptidase [Yersinia pestis biovar Mediaevalis ... gi\|170025512, gi... - gi\|170025512\|ref\|YP_001722017.1\| aminoacyl-histidine dipeptidase [Yersinia pseudotuberculosis YPIII]... gi\|229901252, gi... - gi\|229901252\|ref\|ZP_04516374.1\| aminoacyl-histidine dipeptidase (peptidase D) [Yersinia pestis Nepal... gi\|108808711, gi... - gi\|108808711\|ref\|YP_652627.1\| aminoacyl-histidine dipeptidase [Yersinia pestis Antiqua], gi\|10878062... gi\|165916026, gi... - gi\|89105985\|ref\|ZP_01178496.1\| COG2195: Di- and tripeptidases [Yersinia pestis biovar Orientalis str... gi\|165926660, gi... - gi\|165926660\|ref\|ZP_02222492.1\| aminoacyl-histidine dipeptidase [Yersinia pestis biovar Orientalis s... gi\|166011064, gi... - gi\|166011064\|ref\|ZP_02231962.1\| aminoacyl-histidine dipeptidase [Yersinia pestis biovar Antiqua str.... gi\|229838836, gi... - gi\|229838836\|ref\|ZP_04458995.1\| aminoacyl-histidine dipeptidase (peptidase D) [Yersinia pestis biova... gi\|229687807, gi... - gi\|229899405\|ref\|ZP_04514548.1\| aminoacyl-histidine dipeptidase (peptidase D) [Yersinia pestis biova... gi\|22124867, gi\|... - gi\|22124867\|ref\|NP_668290.1\| aminoacyl-histidine dipeptidase [Yersinia pestis KIM], gi\|21957699\|gb\|A... gi\|25350643 - pir\|\|AE0392 X-His dipeptidase (EC 3.4.13.3) [imported] - Yersinia pestis (strain CO92) gi\|15981166, gi\|... - gi\|218930257\|ref\|YP_002348132.1\| aminoacyl-histidine dipeptidase [Yersinia pestis CO92], gi\|16123389... gi\|45440553, gi\|... - gi\|45440553\|ref\|NP_992092.1\| aminoacyl-histidine dipeptidase [Yersinia pestis biovar Microtus str. 9...	324.0	[0..1]	[485..1]
gi\|77974372, gi\|... - gi\|77974372\|ref\|ZP_00829913.1\| COG2195: Di- and tripeptidases [Yersinia frederiksenii ATCC 33641], g...	323.0	[0..1]	[485..1]
gi\|238784452, gi... - gi\|77957137\|ref\|ZP_00821201.1\| COG2195: Di- and tripeptidases [Yersinia bercovieri ATCC 43970], gi\|2...	322.0	[0..1]	[485..1]
gi\|152959989, gi... - gi\|77631870\|ref\|ZP_00794456.1\| COG2195: Di- and tripeptidases [Yersinia pseudotuberculosis IP 31758]...	322.0	[0..1]	[485..1]
gi\|238795606, gi... - gi\|77962908\|ref\|ZP_00826723.1\| COG2195: Di- and tripeptidases [Yersinia mollaretii ATCC 43969], gi\|2...	321.0	[0..1]	[485..1]
gi\|238793961, gi... - gi\|77978373\|ref\|ZP_00833803.1\| COG2195: Di- and tripeptidases [Yersinia intermedia ATCC 29909], gi\|2...	321.0	[0..1]	[485..1]
gi\|126639075, gi... - gi\|78367580\|ref\|ZP_00837846.1\| Peptidase M20C, X-His dipeptidase [Shewanella sp. PV-4], gi\|78360325\|...	321.0	[0..1]	[485..1]
gi\|89073175, gi\|... - gi\|89073175\|ref\|ZP_01159714.1\| putative aminoacyl-histidine dipeptidase [Photobacterium sp. SKA34], ...	321.0	[0..1]	[485..1]
gi\|28897445, gi\|... - gi\|28897445\|ref\|NP_797050.1\| aminoacyl-histidine dipeptidase [Vibrio parahaemolyticus RIMD 2210633],... gi\|28805657 - gi\|28805657\|dbj\|BAC58934.1\| aminoacyl-histidine dipeptidase [Vibrio parahaemolyticus RIMD 2210633]	321.0	[0..2]	[485..6]
gi\|162418581, gi... - gi\|77634939\|ref\|ZP_00797030.1\| COG2195: Di- and tripeptidases [Yersinia pestis Angola], gi\|162418581...	320.0	[0..1]	[485..1]

Back

Predicted Domain #1

Region A:
Residues: [1-485]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELSQLSPQ PLWDIFAKIC SIPHPSYHEE QLAEYIVGWA KEKGFHVERD QVGNILIRKP  60
   61 ATAGMENRKP VVLQAHLDMV PQKNNDTVHD FTKDPIQPYI DGEWVKARGT TLGADNGIGM 120
  121 ASALAVLADE NVVHGPLEVL LTMTEEAGMD GAFGLQGNWL QADILINTDS EEEGEIYMGC 180
  181 AGGIDFTSNL HLDREAVPAG FETFKLTLKG LKGGHSGGEI HVGLGNANKL LVRFLAGHAE 240
  241 ELDLRLIDFN GGTLRNAIPR EAFATIAVAA DKVDVLKSLV NTYQEILKNE LAEKEKNLAL 300
  301 LLDSVANDKA ALIAKSRDTF IRLLNATPNG VIRNSDVAKG VVETSLNVGV VTMTDNNVEI 360
  361 HCLIRSLIDS GKDYVVSMLD SLGKLAGAKT EAKGAYPGWQ PDANSPVMHL VRETYQRLFN 420
  421 KTPNIQIIHA GLECGLFKKP YPEMDMVSIG PTITGPHSPD EQVHIESVGH YWTLLTELLK 480
  481 EIPAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.0
Match:	2qyvA
Description:	No description for 2qyvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits