YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25329238
Organism:	Clostridium acetobutylicum
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25329238.

Description	E-value	Query Range	Subject Range
YA83_METJA, Y108... - (Q58483) Hypothetical protein MJ1083, Uncharacterized protein MJ1083 - Methanococcus jannaschii, Iro... ISF2_METJA - Iron-sulfur flavoprotein MJ1083 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	167.0	[0..1]	[189..1]
gi\|44921232, gi\|... - gi\|45358474\|ref\|NP_988031.1\| iron-sulfur flavoprotein [Methanococcus maripaludis S2], gi\|44921232\|em...	161.0	[0..1]	[188..1]
gi\|20090828, gi\|... - gi\|20090828\|ref\|NP_616903.1\| iron-sulfur flavoprotein [Methanosarcina acetivorans C2A], gi\|19915896\|...	159.0	[0..1]	[188..1]
gi\|72396073, gi\|... - gi\|73668911\|ref\|YP_304926.1\| iron-sulfur flavoprotein [Methanosarcina barkeri str. Fusaro], gi\|72396...	155.0	[0..1]	[187..1]
gi\|21674123, gi\|... - gi\|21674123\|ref\|NP_662188.1\| hypothetical protein CT1300 [Chlorobium tepidum TLS], gi\|21647281\|gb\|AA...	154.0	[0..1]	[189..1]
gi\|77544791, gi\|... - gi\|77918708\|ref\|YP_356523.1\| putative NADPH-dependent FMN reductase [Pelobacter carbinolicus DSM 238...	153.0	[0..1]	[187..1]
gi\|88189238, gi\|... - gi\|88603776\|ref\|YP_503954.1\| NADPH-dependent FMN reductase [Methanospirillum hungatei JF-1], gi\|8818...	152.0	[0..1]	[187..1]
gi\|251946646, gi... - gi\|253565181\|ref\|ZP_04842637.1\| iron-sulfur flavoprotein [Bacteroides sp. 3_2_5], gi\|251946646\|gb\|EE... gi\|60494121, gi\|... - gi\|60682687\|ref\|YP_212831.1\| putative flavoprotein [Bacteroides fragilis NCTC 9343], gi\|60494121\|emb... gi\|53714676, gi\|... - gi\|53714676\|ref\|YP_100668.1\| iron-sulfur flavoprotein [Bacteroides fragilis YCH46], gi\|52217541\|dbj\|...	152.0	[0..1]	[189..1]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVIGINGSA RKDGNTSILI KTVFKELEKE GIETELIELS GKTIKGCMGC FCCKEKKQCI  60
   61 IRDDFFNECF NKMVNADGII LGSPVYSADI SSKMKAFLER AGVIVATNSG MLKHKVGACV 120
  121 VAVRRGGGMT AVDALNHFLL NKEVLVVGST YWNMVYGKDV GDVILDEEGI KNMRNLGENM 180
  181 AWLMKKIRNV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.221849
Match:	1zwkA
Description:	Structure of WrbA from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: