YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15894616, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15894616, gi|....

Description	E-value	Query Range	Subject Range
CTJB_BACSU, COTJ... - (Q45537) CotJB protein, Protein cotJB OS=Bacillus subtilis GN=cotJB PE=4 SV=1 gi\|16077757, gi\|... - gi\|2633003\|emb\|CAB12509.1\| cotJB [Bacillus subtilis subsp. subtilis str. 168], gi\|16077757\|ref\|NP_38...	132.0	[0..3]	[88..14]
gi\|47526093, gi\|... - gi\|47526093\|ref\|YP_017442.1\| spore coat-associated protein JB [Bacillus anthracis str. 'Ames Ancesto... gi\|30254394, gi\|... - gi\|30260945\|ref\|NP_843322.1\| cotJB protein [Bacillus anthracis str. Ames], gi\|30254394\|gb\|AAP24808.1... gi\|221238613, gi... - gi\|222094555\|ref\|YP_002528615.1\| cotJB protein [Bacillus cereus Q1], gi\|221238613\|gb\|ACM11323.1\| cot... gi\|49480483, gi\|... - gi\|49480483\|ref\|YP_035059.1\| cotJB protein [Bacillus thuringiensis serovar konkukian str. 97-27], gi... gi\|49183791, gi\|... - gi\|49183791\|ref\|YP_027043.1\| cotJB protein [Bacillus anthracis str. Sterne], gi\|49177718\|gb\|AAT53094... gi\|65318225 - gi\|65318225\|ref\|ZP_00391184.1\| hypothetical protein Bant_01001461 [Bacillus anthracis str. A2012]	121.0	[0..10]	[88..12]
gi\|51977992, gi\|... - gi\|52144523\|ref\|YP_082306.1\| spore coat-associated protein JB [Bacillus cereus E33L], gi\|51977992\|gb...	121.0	[0..10]	[88..12]
gi\|67850538, gi\|... - gi\|67875507\|ref\|ZP_00504803.1\| spore coat protein CotJB [Clostridium thermocellum ATCC 27405], gi\|67...	121.0	[0..10]	[87..4]
gi\|29894523, gi\|... - gi\|30018981\|ref\|NP_830612.1\| CotJB protein [Bacillus cereus ATCC 14579], gi\|29894523\|gb\|AAP07813.1\| ... gi\|21398765 - ref\|NP_654750.1\| hypothetical protein BA_1390 [Bacillus anthracis str. A2012] gi\|227816323, gi... - gi\|227816323\|ref\|YP_002816332.1\| cotJB protein [Bacillus anthracis str. CDC 684], gi\|227004626\|gb\|AC... gi\|228840005, gi... - gi\|228919651\|ref\|ZP_04083013.1\| Spore coat-associated protein JB [Bacillus thuringiensis serovar hua... gi\|228983997, gi... - gi\|228983997\|ref\|ZP_04144186.1\| Spore coat-associated protein JB [Bacillus thuringiensis serovar toc... gi\|229042673, gi... - gi\|229042673\|ref\|ZP_04190413.1\| Spore coat-associated protein JB [Bacillus cereus AH676], gi\|2287266... gi\|228925979, gi... - gi\|228925979\|ref\|ZP_04089060.1\| Spore coat-associated protein JB [Bacillus thuringiensis serovar pon... gi\|228815007, gi... - gi\|228944547\|ref\|ZP_04106917.1\| Spore coat-associated protein JB [Bacillus thuringiensis serovar mon... gi\|229126234, gi... - gi\|229126234\|ref\|ZP_04255252.1\| Spore coat-associated protein JB [Bacillus cereus BDRD-Cer4], gi\|228... gi\|229137613, gi... - gi\|229137613\|ref\|ZP_04266219.1\| Spore coat-associated protein JB [Bacillus cereus BDRD-ST26], gi\|228... gi\|229108407, gi... - gi\|229108407\|ref\|ZP_04238024.1\| Spore coat-associated protein JB [Bacillus cereus Rock1-15], gi\|2286... gi\|229120440, gi... - gi\|229120440\|ref\|ZP_04249687.1\| Spore coat-associated protein JB [Bacillus cereus 95/8201], gi\|22866... gi\|254725785 - gi\|254725785\|ref\|ZP_05187567.1\| cotJB protein [Bacillus anthracis str. A1055] gi\|254735111 - gi\|254735111\|ref\|ZP_05192822.1\| cotJB protein [Bacillus anthracis str. Western North America USA6153... gi\|229602412, gi... - gi\|229602412\|ref\|YP_002865388.1\| cotJB protein [Bacillus anthracis str. A0248], gi\|229266820\|gb\|ACQ4... gi\|254682997 - gi\|254682997\|ref\|ZP_05146858.1\| cotJB protein [Bacillus anthracis str. CNEVA-9066] gi\|254757194 - gi\|254757194\|ref\|ZP_05209222.1\| cotJB protein [Bacillus anthracis str. Australia 94] gi\|254739942 - gi\|254739942\|ref\|ZP_05197634.1\| cotJB protein [Bacillus anthracis str. Kruger B] gi\|254753280 - gi\|254753280\|ref\|ZP_05205316.1\| cotJB protein [Bacillus anthracis str. Vollum] gi\|217958394, gi... - gi\|217958394\|ref\|YP_002336942.1\| cotJB protein [Bacillus cereus AH187], gi\|217065527\|gb\|ACJ79777.1\| ... gi\|218902018, gi... - gi\|218902018\|ref\|YP_002449852.1\| cotJB protein [Bacillus cereus AH820], gi\|218539035\|gb\|ACK91433.1\| ... gi\|196031769, gi... - gi\|196037527\|ref\|ZP_03104838.1\| cotJB protein [Bacillus cereus NVH0597-99], gi\|196031769\|gb\|EDX70365... gi\|206744535, gi... - gi\|206977219\|ref\|ZP_03238117.1\| cotJB protein [Bacillus cereus H3081.97], gi\|206744535\|gb\|EDZ55944.1... gi\|190560047, gi... - gi\|190568810\|ref\|ZP_03021713.1\| cotJB protein [Bacillus anthracis Tsiankovskii-I], gi\|190560047\|gb\|E... gi\|196035145, gi... - gi\|196035145\|ref\|ZP_03102551.1\| cotJB protein [Bacillus cereus W], gi\|195992209\|gb\|EDX56171.1\| cotJB... gi\|170125789, gi... - gi\|170709321\|ref\|ZP_02899738.1\| cotJB protein [Bacillus anthracis str. A0389], gi\|170125789\|gb\|EDS94... gi\|172079969, gi... - gi\|177655806\|ref\|ZP_02937048.1\| cotJB protein [Bacillus anthracis str. A0174], gi\|172079969\|gb\|EDT65... gi\|167510130, gi... - gi\|167641929\|ref\|ZP_02400166.1\| cotJB protein [Bacillus anthracis str. A0193], gi\|167510130\|gb\|EDR85... gi\|170689601, gi... - gi\|170689601\|ref\|ZP_02880785.1\| cotJB protein [Bacillus anthracis str. A0465], gi\|170666445\|gb\|EDT17... gi\|165873179, gi... - gi\|165873179\|ref\|ZP_02217793.1\| cotJB protein [Bacillus anthracis str. A0488], gi\|164711090\|gb\|EDR16... gi\|167636624, gi... - gi\|167636624\|ref\|ZP_02394916.1\| cotJB protein [Bacillus anthracis str. A0442], gi\|167527956\|gb\|EDR90...	120.0	[0..3]	[88..1]
gi\|20808217, gi\|... - gi\|20808217\|ref\|NP_623388.1\| spore coat peptide assembly protein cotJB [Thermoanaerobacter tengconge... gi\|20808217 - gi\|20808217\|ref\|NP_623388.1\| spore coat peptide assembly protein cotJB [Thermoanaerobacter tengconge...	118.0	[0..8]	[89..2]
gi\|242232230, gi... - gi\|242256275\|ref\|ZP_04801169.1\| conserved hypothetical protein [Thermoanaerobacter sp. X513], gi\|242... gi\|167039859, gi... - gi\|167039859\|ref\|YP_001662844.1\| hypothetical protein Teth514_1214 [Thermoanaerobacter sp. X514], gi...	116.0	[0..8]	[89..2]
gi\|76587644, gi\|... - gi\|76797004\|ref\|ZP_00779349.1\| spore coat peptide assembly protein cotJB [Thermoanaerobacter ethanol... gi\|241885204, gi... - gi\|241902489\|ref\|ZP_04787223.1\| conserved hypothetical protein [Thermoanaerobacter brockii subsp. fi...	114.0	[0..8]	[89..2]
gi\|47564741, gi\|... - gi\|47564741\|ref\|ZP_00235785.1\| CotJB protein [Bacillus cereus G9241], gi\|47558114\|gb\|EAL16438.1\| Cot...	112.0	[0..22]	[88..24]
gi\|74491966, gi\|... - gi\|75760538\|ref\|ZP_00740573.1\| CotJB protein [Bacillus thuringiensis serovar israelensis ATCC 35646]...	112.0	[0..22]	[88..24]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMKKMKKMD KMELLKQIMA VDFTIIDLSL YLNTHPMDKE AIAKHNAFVA QSHMLKGQYQ  60
   61 KYYGMLTATN SCSPYPWQWI KEPWPWEYDA NFRL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.940	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits