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View Structure Prediction Details

Protein: VRN1_ARATH
Organism: Arabidopsis thaliana
Length: 341 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VRN1_ARATH.

Description E-value Query
Range
Subject
Range
gi|33943517 - gi|33943517|gb|AAQ55453.1| reduced vernalization response 1 [Brassica rapa]
gi|33943517|gb|A... - reduced vernalization response 1 [Brassica rapa]
230.0 [0..1] [341..1]
gi|92874950 - gi|92874950|gb|ABE83132.1| Transcriptional factor B3; Cupredoxin [Medicago truncatula]
215.0 [0..1] [339..1]
Y1235_ORYSJ - B3 domain-containing protein Os01g0723500 OS=Oryza sativa subsp. japonica GN=Os01g0723500 PE=3 SV=1
193.0 [0..3] [339..18]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW  60
   61 FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS EINYHSTGLM DSAHNHFKRA 120
  121 RL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.0
Match: 1yelA
Description: Structure of the hypothetical Arabidopsis thaliana protein At1g16640.1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [123-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FEDLEDEDAE VIFPSSVYPS PLPESTVPAN KGYASSAIQT LFTGPVKAEE PTPTPKIPKK  60
   61 RGRKKKNADP EEINSSAPRD DDPENRSKFY ESAS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [217-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARKRTVTAEE RERAINAAKT FEPTNPFFRV VLRPSYLYRG CIMYLPSGFA EKYLSGISGF  60
   61 IKVQLAEKQW PVRCLYKAGR AKFSQGWYEF TLENNLGEGD VCVFELLRTR DFVLKVTAFR 120
  121 VNEYV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.221849
Match: 1widA
Description: Solution Structure of the B3 DNA-Binding Domain of RAV1
Matching Structure (courtesy of the PDB):

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Created and Maintained by: Michael Riffle