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View Structure Prediction Details

Protein: gi|31432894, gi|...
Organism: Oryza sativa Japonica Group
Length: 274 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31432894, gi|....

Description E-value Query
Range
Subject
Range
gi|84370073, gi|... - gi|84370073|ref|NP_001033613.1| mitochondrial ribosomal protein S18B [Bos taurus], gi|83638632|gb|AA...
185.0 [0..78] [260..19]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSALRRSL RRLLPSSPPP PSPASAAAAA TFRRSFLSGG GDGVGESVEE FEKRMLSGLD  60
   61 DGLENRRGGS DWGWRGGFRN RGNSSSILAE LCTGFDSLED GLDEKLDEAS RTFHVTEEYE 120
  121 DDDYDYRPDV T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [132-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRRGSTYNVK DLDLTRPAAA KNPPRPQFQT TTEEVLKKAD FRNVRFLANF LTEAGIIIKR  60
   61 SQTRISAKAQ RKVAREIKTA RALGLLPFTT MGQRPFIYGR SVEVNLSEEE YGYDFVDRRA 120
  121 GEPDENADDA VPDEDVAPGV ENA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.522879
Match: 1vs5R
Description: No description for 1vs5R was found.

Predicted functions:

Term Confidence Notes
structural molecule activity 0.36378695673226 bayes_pls_golite062009
structural constituent of ribosome 0.351838444516321 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle