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View Structure Prediction Details

Protein: gi|115476988, gi...
Organism: Oryza sativa Japonica Group
Length: 885 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115476988, gi....

Description E-value Query
Range
Subject
Range
gi|50947025, gi|... - gi|51964978|ref|XP_507273.1| PREDICTED P0419H09.37-1 gene product [Oryza sativa (japonica cultivar-g...
1264.0 [0..1] [701..1]
gi|30687819, gi|... - gi|30687819|ref|NP_850949.1| MBD8; methyl-CpG binding [Arabidopsis thaliana], gi|22136682|gb|AAM9166...
207.0 [0..122] [313..161]

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Predicted Domain #1
Region A:
Residues: [1-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEVFPVVD LRVLSQSDLE ALAAASAHAV APGGSCPDAD QLPPLKIDRA VFNESAGSRK  60
   61 QTFSRVRFGA AAAVAASPSS PSPSAAAKLP RGNDKEDSFI AYHLRRLFAP DDPSSPQIQT 120
  121 LALPAPPSPD PDQLTTNSKG VSVDLVSLSR LADPYDAELG KRTAGMTTEE ELMGFISSLA 180
  181 GQWVSQRMRR KLVDASFFGD HLPSGWRLQL GIKRKDRKAW VNCFSYVSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [230-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGQSFATCQE VSAYLMSLLG YPEFKTDNIE YGSTQQHGLC ADDGVNVLGV QHQIGTGMDS  60
   61 QSILPVASIT FSSHSRDQDE TDADDI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [316-483]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSYECQQCNL TFHGQSAYAH HLITFHKMGS KRRKINKVGK FGEPVIGKDG KFECPVCNKT  60
   61 FEEQSRYFGH VGSHAKYHGL TPEAFLQTLS GKVGNDSFAG LSCSLQDLVG SPQLNEKTTA 120
  121 SEARSQHHNC STKHGGNSTR GIDLFNSNCP ANFNGHNQTW CRPDEIPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [484-704]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTDAPSTWTY RNNVTNCADR TVPRTAPQPN DHMDCRVSGF AEATNFNDQA GRHQGFRPSS  60
   61 FGTTNHCQGQ IIDHAVAASK HAEVNNSMKS RDVNLNSRLN TISFPIATAN NETSTALNDV 120
  121 NRSCITGKGF SGSFSNNDGA ASIVLPSSGL NNKIPSSLGV ADRSSIAARS FNAGYVNENG 180
  181 ASEANNIGNK NNTMVYQTSL AMRPVSPCDL QLGFSGQKQQ I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [705-781]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPGYGELRPA ASGSPQLGGM AANSSIPTRP SQPQFGSMAR TDALPTGPSQ PGSLARPNFV  60
   61 PTGFSQFASR PPTSVPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [782-885]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADSSQFAGGM ARQNIPTTSE PTLVLGYTPQ MVNGPPAQLG WDLSLSRMVS EGMLPVLCIW  60
   61 CNSQFHHFGP IDAQQSGSFG FICPACKEKM SGNPNAPNNG PWQP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle