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View Structure Prediction Details

Protein: gi|50940811, gi|...
Organism: Oryza sativa Japonica Group
Length: 641 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50940811, gi|....

Description E-value Query
Range
Subject
Range
gi|241941352, gi... - gi|242080467|ref|XP_002445002.1| hypothetical protein SORBIDRAFT_07g002590 [Sorghum bicolor], gi|241...
644.0 [0..1] [638..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACLKLGSRA DVFRKQGQDW YCTTGLPSDI TVTVGEQSFH LHKFPLLSKS GLLERCIREK  60
   61 IENGDNSCVI DLSDIPGGAK AFELTAKFCY GVKFEMTASN VVHLRCAAEY LEMTEEIAEG 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 2if5A
Description: No description for 2if5A was found.

Predicted Domain #2
Region A:
Residues: [121-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLIAQTENFL TQTVLRSWKD SIKALHTCDD IIDLAEKLQI VKRCIDSVAT RSCTDPDLFG  60
   61 WPVVQYGGPM QSPGGSVLWN GISTGARPRH SSPDWWYDDV SCLSLPLYKK VISAMEYRGI 120
  121 NQDIIVGSLN HYAKRRLPGL NRRKSISDVS SCLSISSLTS IPSEEEQKYL LEEIDRLLPF 180
  181 QR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [303-454]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVTSCKLLFG LLRTAIILKA SPSCVSNLER RIGMQLDKAT LEDLLIPNIS ESVETLYDVD  60
   61 CVHKILDHFL AMDQETGGAS PGLGEDAQML ASPSLMPITM VAKLIDGYLA EVAPDVNLKL 120
  121 PKFRSLAAAI PDYARPIDDG LYRAIDIYLK AH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [455-641]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHLSESEKEE LCRVMDCQKL SLEACTHAAQ NERLPLRVIV QVLFFEQLQL RSSIAECLMV  60
   61 SENLEGGSRQ LIPTISGEQY RPGWPLASRE NQALREGMDN MKQRVADLEK ECSTMRDEIE 120
  121 RLGRSRSTGK GRFSLNMKPQ ICSTKEAIPT TATTTATASE EKMAVVKGDT TPRLKLSRHK 180
  181 KKLSIEA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle