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View Structure Prediction Details

Protein: gi|215678905, gi...
Organism: Oryza sativa Japonica Group
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215678905, gi....

Description E-value Query
Range
Subject
Range
gi|72255605 - gi|72255605|gb|AAZ66923.1| 117M18_4 [Brassica rapa]
519.0 [0..2] [346..89]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPRGRKRA AAAAAVAEED SSKPEAAEAK KPAARGRGKR AKASPKPKPE TEYFPEKRNL  60
   61 EDLWLSAFPV GTEWENIDKI KEFNWNFENL EKALEEGGEL YGKTVYLFGS TEPQLLEVNG 120
  121 ESKIVL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPIVVAVDCP FPPSDKIGIN SVQRENEEIV PMKAMKMAWV PYVPLEDRLS RIDSLKTKIF  60
   61 TLGCTQRRSA LRHLKTERVK LFDYCMPYYM PLNPPEDEDD TVVNIIYPLE P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [238-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIVCDFDWEM DDYEDFADEK VKDEVLPEDE KEKFKEFIKE RVRERKRELK QAKEARKKAI  60
   61 DDMDPKVKEA FENIKFYKFY PVKTPDTPDV SNVKAKYINR YYRHAHHLM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle