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View Structure Prediction Details

Protein: gi|125588126, gi...
Organism: Oryza sativa Japonica Group
Length: 237 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125588126, gi....

Description E-value Query
Range
Subject
Range
gi|50753587 - gi|50753587|ref|XP_414053.1| PREDICTED: hypothetical protein XP_414053 [Gallus gallus]
209.0 [0..1] [237..606]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVQEFTVDL NKPLVFQVGH LEERYQEWVH QPIVSKEGPR FFGNDVLEFL TRTKWFAVPT  60
   61 IWLPVVCWLL VKSIRMG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTIQEVGLMA LFGIFIWTLI EYTLHRFLFH IETKTYWANT AHYLLHGCHH KHPMDSLRLV  60
   61 FPPTATAILC VPFWKLVAFF ATPTITPALF GGGLLGYVMY DCTHYYLHHG QPSKEPAKNL 120
  121 KRYHLNHHFR IQNKGFGITS SLWDYVFGTL PPSKTTGKNN 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 18.09691
Match: PF04116.4
Description: No description for PF04116.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle