YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|115482122, gi...
Organism: Oryza sativa Japonica Group
Length: 363 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115482122, gi....

Description E-value Query
Range
Subject
Range
gi|37534558, gi|... - gi|37534558|ref|NP_921581.1| putative speckle-type protein [Oryza sativa (japonica cultivar-group)],...
289.0 [0..1] [362..1]

Back

Predicted Domain #1
Region A:
Residues: [1-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPAARRGNP SRSASAIVAD TATGYHLLKV DGYSLTKATP TGSSLTSTQF TVGGHRWRIK  60
   61 YYPNGDSADS ADYISIYLLL DEKASLDLKV EAKYLISFAD QVKTQPSLKY RTVRTFHRQG 120
  121 SWTWGYGKFI KREDFEKSDH LRDDSFTIRC DILVVHKIHT KETAEILPVE TFVSVPPSDM 180
  181 NQQFGDLLET EKGADVVLEV GGQTFAAHRC VLAARSPVFR AELYGLMKEG DTAGVVCIEE 240
  241 MEAQVFKVLL RFLYTDSLPE MKEEEDVMCQ HLLVAADRYN LERLKLICEE KLCKYISVGT 300
  301 VSNILALADQ HHCDGLKKAC FNFLGSPANL SAVVAGDGFK HLSKICPSLM EELVVVLALP 360
  361 GSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.69897
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle