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View Structure Prediction Details

Protein: gi|50936027, gi|...
Organism: Oryza sativa Japonica Group
Length: 175 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50936027, gi|....

Description E-value Query
Range
Subject
Range
gi|92875790, gi|... - gi|92875790|gb|ABE83658.1| Transport protein particle (TRAPP) component, Bet3 [Medicago truncatula],...
203.0 [0..1] [175..1]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGREVAESCV DGVVMQMVAA YCGGFYAAKP ELAARRIEAI GFQVGHQLTE RYTMERPRFS  60
   61 DHLEAIKFIC KDFWSELFKK QIDNLKTNHR GTFVLQDNHF RWLTRVSVDP SVESMDATEN 120
  121 DSTTLGDSAA QTTSMLLYFP CGIIRGALTN LGISCSVTAD MSNLPACSFV VRIKT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.0
Match: 2bjnA
Description: X-ray Structure of human TPC6
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle