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View Structure Prediction Details

Protein: MEX1_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MEX1_ORYSJ.

Description E-value Query
Range
Subject
Range
gi|116310928 - gi|116310928|emb|CAH67866.1| B0403H10-OSIGBa0105A11.18 [Oryza sativa (indica cultivar-group)]
635.0 [0..1] [399..1]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSVSSVRL PLRAAPPLYG RREWRADGAR APSPALVAVK PLSCRAPASY RSALLLHRRR  60
   61 RYALPPVAAT ATSKPVLK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPKKYQEWDS LTAKFAGAAN VPFLLLQLPQ IILNARNLLA GNKTALFAVP WLGMLTGLLG  60
   61 NLSLLSYFAK KKETGAV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [156-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVQTLGVIST YVVIAQLAMA ESMPLPQFVA TSAVVAAGLL LNFLNYFGWL PGTLWLLWED  60
   61 FITIGGLAVL PQVMWSTFVP FIPNSLLPGI ISGSLAATAV VMARMGKLSK GGINFVGSLS 120
  121 GWTATLLFMW MPVAQMWTNY LNPSNIKGLS AFTMLLAMIG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [316-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGLMIPRAVF IRDLMWFTGS AWASFLQGWG NLACMYCFDS ISRESFLATT FGLLLWLGFT  60
   61 LWRDTIAHGN SSPVTSLKEL LFGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle