YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25388168
Organism:	Streptococcus pneumoniae
Length:	744 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25388168.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	268.0	[0..14]	[596..2298]
gi\|25509365 - pir\|\|F98114 choline-binding protein [imported] - Streptococcus pneumoniae (strain R6) gi\|15903986, gi\|... - gi\|15903986\|ref\|NP_359536.1\| choline binding protein PcpA [Streptococcus pneumoniae R6], gi\|15459643...	245.0	[0..330]	[744..269]
gi\|114145377 - gi\|114145377\|dbj\|BAF30978.1\| collagenolytic protease [Geobacillus sp. MO-1]	245.0	[0..406]	[744..1201]
gi\|116515800, gi... - gi\|116515800\|ref\|YP_817353.1\| choline binding protein PcpA [Streptococcus pneumoniae D39], gi\|116076...	243.0	[0..330]	[744..259]
gi\|21389196 - gi\|21389196\|gb\|AAM50526.1\|AF516671_1 surface protein A [Streptococcus pneumoniae]	237.0	[0..446]	[744..22]

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Predicted Domain #1

Region A:
Residues: [1-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKKMILTS LASVAILGAG FVTSQPTFVR AEESPQVVEK SSLEKKYEEA KAKADTAKKD  60
   61 YETAKKKAED AQKKYEDDQK RTEEKARKEA EASQKLNDVA LVVQNAYKEY REVQNQRSKY 120
  121 KSDAEYQKKL TEVDSKIEKA RKEQQDLQNK FNEVRAVVVP EPNALAETKK KAEEAKAEEK 180
  181 VAKRKYDYAT LKVALAKKEV EAKELEIEKL QYEISTLEQE VATAQHQVDN LKKLLAGADP 240
  241 DDGTEVIEAK LKKGEAELNA KQAELAKKQT ELEKLLDSLD PEGKTQDELD KEAEEAELDK 300
  301 KADELQNKVA DLEKEISNLE ILLGGADPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [330-521]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDTAALQNKL AAKKAELAKK QTELEKLLDS LDPEGKTQDE LDKEAEEAEL DKKADELQNK  60
   61 VADLEKEISN LEILLGGADS EDDTAALQNK LATKKAELEK TQKELDAALN ELGPDGDEEE 120
  121 TPAPAPQPEQ PAPAPKPEQP APAPKPEQPA PAPKPEQPAP APKPEQPAPA PKPEQPAKPE 180
  181 KPAEEPTQPE KP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.21
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #3

Region A:
Residues: [522-744]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATPKTGWKQE NGMWYFYNTD GSMAIGWLQN NGSWYYLNAN GAMATGWVKD GDTWYYLEAS  60
   61 GAMKASQWFK VSDKWYYVNS NGAMATGWLQ YNGSWYYLNA NGDMATGWLQ YNGSWYYLNA 120
  121 NGDMATGWAK VNGSWYYLNA NGAMATGWAK VNGSWYYLNA NGSMATGWVK DGDTWYYLEA 180
  181 SGAMKASQWF KVSDKWYYVN GLGALAVNTT VDGYKVNANG EWV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	2bibA
Description:	Crystal structure of the complete modular teichioic acid phosphorylcholine esterase Pce (CbpE) from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits