YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260276, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260276, gi|....

Description	E-value	Query Range	Subject Range
gi\|34811708, gi\|... - gi\|34811708\|pdb\|1H5S\|B Chain B, Thymidylyltransferase Complexed With Tmp, gi\|21466153\|pdb\|1H5T\|B Cha...	3.0E-43	[1..226]	[3..245]
gi\|71906877, gi\|... - gi\|71906877\|ref\|YP_284464.1\| glucose-1-phosphate thymidylyltransferase [Dechloromonas aromatica RCB]...	3.0E-43	[3..226]	[6..246]
gi\|21466154\|pdb\|... - Chain D, Thymidylyltransferase Complexed With Thimidine And Glucose-1-Phospate, Chain C, Thymidylylt... RMA1_ECOLI, RMLA... - Glucose-1-phosphate thymidylyltransferase 1 (EC 2.7.7.24) (dTDP-glucose synthase 1) (dTDP-glucose py... gi\|170081669, gi... - gi\|170081669\|ref\|YP_001730989.1\| glucose-1-phosphate thymidylyltransferase [Escherichia coli str. K-... EG11978 - glucose-1-phosphate thymidylyltransferase / Glucose-1-phosphate thymidylyltransferase 1; TDP-glucose... gi\|89108859, gi\|... - gi\|89108859\|ref\|AP_002639.1\| glucose-1-phosphate thymidylyltransferase [Escherichia coli str. K-12 s... gi\|238901229, gi... - gi\|238901229\|ref\|YP_002927025.1\| glucose-1-phosphate thymidylyltransferase [Escherichia coli BW2952]... EG11978 - glucose-1-phosphate thymidylyltransferase / Glucose-1-phosphate thymidylyltransferase 1; TDP-glucose...	5.0E-43	[1..226]	[3..245]
gi\|46985 - gi\|46985\|emb\|CAA43074.1\| glucose-1-phosphate thymidylyltransferase [Salmonella enterica] gi\|96668 - pir\|\|S23342 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) [validated] - Salmonella cholera... RMLA_SALAN - Glucose-1-phosphate thymidylyltransferase OS=Salmonella anatum GN=rmlA PE=3 SV=1	3.0E-42	[3..226]	[5..245]
gi\|72132990 - gi\|72132990\|gb\|AAZ66343.1\| RmlA [Listonella anguillarum]	3.0E-42	[3..225]	[2..241]
gi\|83746221, gi\|... - gi\|83746221\|ref\|ZP_00943275.1\| Glucose-1-phosphate thymidylyltransferase [Ralstonia solanacearum UW5...	3.0E-42	[1..225]	[70..311]
gi\|197361929, gi... - gi\|197361929\|ref\|YP_002141566.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica ... gi\|56127258, gi\|... - gi\|56413001\|ref\|YP_150076.1\| TDP-glucose pyrophosphorylase [Salmonella enterica subsp. enterica sero...	4.0E-42	[3..226]	[5..245]
gi\|9957857 - gi\|9957857\|gb\|AAG09532.1\|AF279623_3 glucose-1-phosphate thymidylyltransferase [Salmonella enterica]	4.0E-42	[3..226]	[5..245]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTLIIPAAG QGKRMGAGKN KLFLLINEVP IIVHTLRAFE KDKACKNIIM AINEEERPYF  60
   61 EELMQKYPVE KPVQFIQGGA ERQDSVYNAI QHTTDVEYVL VHDGARPFVT NKVIQDVLTA 120
  121 AEKYGASICA VPVKDTVKKV EQGVVVETVE RSQLKAVQTP QGFSVSLLLE AHRSAKQSCF 180
  181 LGTDDASLVE RIGKQVGVVE GSYYNIKVTT PEDLLIAESF LHVQKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.221849
Match:	1vgtA
Description:	Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	2.01680144494637	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
transferase activity	1.47184463413038	bayes_pls_golite062009
nucleotidyltransferase activity	1.03393419806381	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.651454753851031	bayes_pls_golite062009
UDP-glycosyltransferase activity	0.423789091098118	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.361674579616957	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: