YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260820, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260820, gi|....

Description	E-value	Query Range	Subject Range
gi\|167038831, gi... - gi\|167038831\|ref\|YP_001661816.1\| periplasmic binding protein/LacI transcriptional regulator [Thermoa... gi\|242258204, gi... - gi\|242258204\|ref\|ZP_04803030.1\| transcriptional regulator, LacI family [Thermoanaerobacter sp. X513]...	4.0E-70	[4..306]	[30..329]
gi\|20515183, gi\|... - gi\|20806727\|ref\|NP_621898.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20806727 - gi\|20806727\|ref\|NP_621898.1\| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi\|254478068, gi... - gi\|254478068\|ref\|ZP_05091451.1\| Periplasmic binding proteins and sugar binding domain of the LacI fa...	6.0E-69	[4..306]	[30..329]
gi\|76797419, gi\|... - gi\|76797419\|ref\|ZP_00779738.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti... gi\|241882990, gi... - gi\|241904637\|ref\|ZP_04789316.1\| transcriptional regulator, LacI family [Thermoanaerobacter brockii s...	5.0E-68	[4..306]	[30..327]
gi\|51891908, gi\|... - gi\|51891908\|ref\|YP_074599.1\| LacI family transcriptional repressor [Symbiobacterium thermophilum IAM...	1.0E-67	[4..306]	[27..326]
gi\|89209818, gi\|... - gi\|89209818\|ref\|ZP_01188212.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti...	4.0E-65	[4..306]	[29..328]
gi\|28204383, gi\|... - gi\|28211940\|ref\|NP_782884.1\| catabolite control protein [Clostridium tetani E88], gi\|28204383\|gb\|AAO...	1.0E-64	[4..306]	[31..329]

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Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWLLILVA CMMVITAGCS MEPPEWAKDS SDKGRNKTIK VGFSVSTLNN PFFVTLKKGA  60
   61 EKKAKESGIE LIAVDAQNDA AKQTNDVEDL IQKGVDVVVI NPTDSDAVAS AVSAANAANV 120
  121 PVITVDRVAN SGKVVSHIAS NNIEGGQMAS DYIRELVGEG ANVAELEGIP GSSAARERGK 180
  181 GFHNVADKSL KVVAKQAADF DRAKGLSVME NILQANGDIK AVFAHNDEMA LGALEALKSA 240
  241 GKTDVVVVGF DATEDAVKAV NDGRMAATVA QKPELIGEKA MQTAKEITQG KKVDKSIPIE 300
  301 LELIKKNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.0
Match:	2ioyA
Description:	No description for 2ioyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits