YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254907, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254907, gi|....

Description	E-value	Query Range	Subject Range
gi\|89151429, gi\|... - gi\|89200603\|ref\|ZP_01179355.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	0.0	[1..347]	[1..347]
gi\|10717146 - gi\|10717146\|gb\|AAG22037.1\|AF305387_4 OppD [Bacillus thuringiensis] gi\|42780377, gi\|... - gi\|42780377\|ref\|NP_977624.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC... gi\|228951667, gi... - gi\|228951667\|ref\|ZP_04113769.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228938403, gi... - gi\|228938403\|ref\|ZP_04101013.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228852668, gi... - gi\|228906920\|ref\|ZP_04070787.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228732237, gi... - gi\|229028957\|ref\|ZP_04185056.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus AH1... gi\|228775377, gi... - gi\|228984358\|ref\|ZP_04144538.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228781810, gi... - gi\|228977893\|ref\|ZP_04138274.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|228788432, gi... - gi\|228971282\|ref\|ZP_04131910.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus thuringien... gi\|206744093, gi... - gi\|206977665\|ref\|ZP_03238557.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus H... gi\|229108747, gi... - gi\|229108747\|ref\|ZP_04238355.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus Roc... gi\|217065388, gi... - gi\|217958763\|ref\|YP_002337311.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ... gi\|229078481, gi... - gi\|229078481\|ref\|ZP_04211041.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus Roc... gi\|229068842, gi... - gi\|229068842\|ref\|ZP_04202137.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus F65... gi\|206968151, gi... - gi\|206968151\|ref\|ZP_03229107.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus A... gi\|228726274, gi... - gi\|229043033\|ref\|ZP_04190763.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus AH6... gi\|228633963, gi... - gi\|229149490\|ref\|ZP_04277725.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus m15... gi\|229143896, gi... - gi\|229143896\|ref\|ZP_04272314.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus BDR... gi\|228645630, gi... - gi\|229137973\|ref\|ZP_04266572.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus BDR... gi\|228656984, gi... - gi\|229126595\|ref\|ZP_04255609.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus BDR... gi\|228594086, gi... - gi\|229189375\|ref\|ZP_04316394.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATC... gi\|229177701, gi... - gi\|229177701\|ref\|ZP_04305076.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus 172... gi\|228611564, gi... - gi\|229171930\|ref\|ZP_04299497.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus MM3... gi\|229154852, gi... - gi\|229154852\|ref\|ZP_04282967.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATC... gi\|228588024, gi... - gi\|229195484\|ref\|ZP_04322252.1\| Oligopeptide transport ATP-binding protein oppD [Bacillus cereus m12... gi\|218235469, gi... - gi\|218235469\|ref\|YP_002365970.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ... gi\|221238969, gi... - gi\|222094911\|ref\|YP_002528971.1\| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ...	0.0	[1..347]	[1..347]
gi\|163861282, gi... - gi\|89204591\|ref\|ZP_01183168.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	0.0	[1..347]	[1..347]
gi\|30019336, gi\|... - gi\|30019336\|ref\|NP_830967.1\| oligopeptide transport ATP-binding protein oppD [Bacillus cereus ATCC 1...	0.0	[1..347]	[1..347]
gi\|56419349, gi\|... - gi\|56419349\|ref\|YP_146667.1\| oligopeptide ABC transporter ATP-binding protein [Geobacillus kaustophi...	0.0	[1..337]	[1..337]
gi\|23100423, gi\|... - gi\|23100423\|ref\|NP_693890.1\| dipeptide ABC transporter ATP-binding protein [Oceanobacillus iheyensis...	0.0	[1..327]	[1..327]
gi\|68056403, gi\|... - gi\|68056403\|ref\|ZP_00540525.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	0.0	[1..331]	[1..332]
gi\|16414809, gi\|... - pir\|\|AE1719 oligopeptide ABC transporter (ATP-binding protein) homolog lin2297 [imported] - Listeria... gi\|16801361 - gi\|16801361\|ref\|NP_471629.1\| hypothetical protein lin2297 [Listeria innocua Clip11262] gi\|47015910, gi\|... - gi\|47095767\|ref\|ZP_00233373.1\| oligopeptide ABC transporter, ATP-binding protein [Listeria monocytog... gi\|47091862, gi\|... - gi\|47091862\|ref\|ZP_00229657.1\| oligopeptide ABC transporter, ATP-binding protein [Listeria monocytog... gi\|8131708, gi\|2... - gi\|8131708\|gb\|AAF73093.1\|AF103793_4 ATPase OppD [Listeria monocytogenes], pir\|\|AI1348 oligopeptide A... gi\|224498939 - gi\|224498939\|ref\|ZP_03667288.1\| oligopeptide transport ATP-binding protein OppD [Listeria monocytoge... gi\|224501007 - gi\|224501007\|ref\|ZP_03669314.1\| oligopeptide transport ATP-binding protein OppD [Listeria monocytoge... gi\|226224801, gi... - gi\|226224801\|ref\|YP_002758908.1\| oligopeptide ABC transporter (ATP-binding protein) [Listeria monocy... gi\|254825243 - gi\|254825243\|ref\|ZP_05230244.1\| oligopeptide ABC transporter (ATP-binding protein) [Listeria monocyt... gi\|254853318 - gi\|254853318\|ref\|ZP_05242666.1\| oligopeptide ABC transporter (ATP-binding protein) [Listeria monocyt... gi\|254878190 - gi\|254878190\|ref\|ZP_05250900.1\| oligopeptide ABC transporter (ATP-binding protein) [Listeria monocyt... gi\|217963645, gi... - gi\|217963645\|ref\|YP_002349323.1\| oligopeptide transport ATP-binding protein OppD [Listeria monocytog... gi\|116873626, gi... - gi\|116873626\|ref\|YP_850407.1\| oligopeptide ABC transporter, ATP-binding protein [Listeria welshimeri... gi\|153185102, gi... - gi\|254899105\|ref\|ZP_05259029.1\| oligopeptide ABC transporter (ATP-binding protein) [Listeria monocyt... gi\|46881698, gi\|... - gi\|46908427\|ref\|YP_014816.1\| oligopeptide ABC transporter, ATP-binding protein [Listeria monocytogen... gi\|254912754, gi... - gi\|254912754\|ref\|ZP_05262766.1\| oligopeptide ABC transporter (ATP-binding protein) [Listeria monocyt... gi\|16804232 - gi\|16804232\|ref\|NP_465717.1\| hypothetical protein lmo2193 [Listeria monocytogenes EGD-e] gi\|254872662, gi... - gi\|254872662\|ref\|ZP_05245372.1\| oligopeptide ABC transporter (ATP-binding protein) [Listeria monocyt... gi\|153175458, gi... - gi\|254826918\|ref\|ZP_05231605.1\| oligopeptide ABC transporter (ATP-binding protein) [Listeria monocyt... gi\|254937081, gi... - gi\|254937081\|ref\|ZP_05268778.1\| oligopeptide ABC transporter (ATP-binding protein) [Listeria monocyt... gi\|153203293, gi... - gi\|254931694\|ref\|ZP_05265053.1\| oligopeptide ABC transporter (ATP-binding protein) [Listeria monocyt...	0.0	[1..330]	[1..330]
gi\|221313482 - gi\|221313482\|ref\|ZP_03595287.1\| peptide ABC transporter ATP-binding protein [Bacillus subtilis subsp... gi\|221318404 - gi\|221318404\|ref\|ZP_03599698.1\| peptide ABC transporter ATP-binding protein [Bacillus subtilis subsp... DPPD_BACSU - Dipeptide transport ATP-binding protein DppD OS=Bacillus subtilis GN=dppD PE=3 SV=1 DPPD_BACSU - Dipeptide transport ATP-binding protein DppD OS=Bacillus subtilis (strain 168) GN=dppD PE=3 SV=1 gi\|221322678 - gi\|221322678\|ref\|ZP_03603972.1\| peptide ABC transporter ATP-binding protein [Bacillus subtilis subsp...	0.0	[1..328]	[1..328]
gi\|76588634, gi\|... - gi\|76796052\|ref\|ZP_00778421.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin... gi\|241902713, gi... - gi\|241902713\|ref\|ZP_04787445.1\| oligopeptide/dipeptide ABC transporter, ATPase subunit [Thermoanaero... gi\|114805380, gi... - gi\|167039279\|ref\|YP_001662264.1\| oligopeptide/dipeptide ABC transporter, ATPase subunit [Thermoanaer...	0.0	[1..332]	[1..333]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLLEVKDL QVSFDTHAGE VQAVRGVTFD LKKGETLAIV GESGSGKSVT SKALMGLIPN  60
   61 PPGRIKNGEI VFEGRDLTKL TEKEMQQVRG KDIAMIFQDP MTSLNPTMTI GNQIMEGLIK 120
  121 HQGMSKADAR KVALELIDLV GIPNPEARLK QYPHQFSGGM RQRVVIAMAL ACNPKLLIAD 180
  181 EPTTALDVTI QAQILELMKD IQQKTEAAII FITHDLGVVA NVADRVAVMY AGKVVEIGTV 240
  241 DEIFYNPKHP YTWGLIASMP SLDGSEEELY AIPGTPPDLL KPPKGDAFAP RNPQALKIDF 300
  301 EMDPPLFKVS DTHYAATWLL HEQAPEVRPP AVVEKRILQM KAGEQHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.221849
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits