YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261381, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261381, gi|....

Description	E-value	Query Range	Subject Range
gi\|42736382, gi\|... - gi\|42780463\|ref\|NP_977710.1\| signal peptidase I [Bacillus cereus ATCC 10987], gi\|42736382\|gb\|AAS4031... gi\|217958852, gi... - gi\|217958852\|ref\|YP_002337400.1\| signal peptidase I [Bacillus cereus AH187], gi\|217064637\|gb\|ACJ7888... gi\|206977838, gi... - gi\|206977838\|ref\|ZP_03238727.1\| signal peptidase I [Bacillus cereus H3081.97], gi\|206743935\|gb\|EDZ55...	7.0E-48	[1..189]	[1..189]
gi\|47556713, gi\|... - gi\|47566160\|ref\|ZP_00237188.1\| signal sequence peptidase [Bacillus cereus G9241], gi\|47556713\|gb\|EAL...	2.0E-47	[1..189]	[1..189]
gi\|29894973, gi\|... - gi\|30019429\|ref\|NP_831060.1\| Signal peptidase I [Bacillus cereus ATCC 14579], gi\|29894973\|gb\|AAP0826... gi\|206967902, gi... - gi\|206967902\|ref\|ZP_03228858.1\| signal peptidase I [Bacillus cereus AH1134], gi\|206736822\|gb\|EDZ5396...	2.0E-46	[1..189]	[1..189]
gi\|228750629, gi... - gi\|229010664\|ref\|ZP_04167864.1\| Signal peptidase SipW; Serine peptidase; MEROPS family S26B [Bacillu... gi\|229057006, gi... - gi\|229057006\|ref\|ZP_04196400.1\| Signal peptidase SipW; Serine peptidase; MEROPS family S26B [Bacillu... gi\|89157559, gi\|... - gi\|89204498\|ref\|ZP_01183075.1\| Peptidase S26B, eukaryotic signal peptidase [Bacillus weihenstephanen...	1.0E-45	[1..189]	[1..189]
gi\|6048416 - gi\|6048416\|gb\|AAF02220.1\|AF085497_1 signal peptidase type I [Bacillus amyloliquefaciens]	6.0E-42	[1..188]	[1..188]
gi\|152023555, gi... - gi\|89200953\|ref\|ZP_01179702.1\| Peptidase S26B, eukaryotic signal peptidase [Bacillus cereus subsp. c...	1.0E-41	[1..186]	[1..186]
LEPW_BACSU - Signal peptidase I W OS=Bacillus subtilis (strain 168) GN=sipW PE=1 SV=1 gi\|221323909 - gi\|221323909\|ref\|ZP_03605203.1\| type I signal peptidase [Bacillus subtilis subsp. subtilis str. SMY] LEPW_BACSU - Signal peptidase I W OS=Bacillus subtilis GN=sipW PE=1 SV=1	9.0E-40	[6..186]	[2..182]
gi\|25494695 - pir\|\|B83916 signal peptidase (type I) sipW [imported] - Bacillus halodurans (strain C-125) gi\|15614693, gi\|... - gi\|15614693\|ref\|NP_242996.1\| signal peptidase (type I) [Bacillus halodurans C-125], gi\|10174749\|dbj\|...	2.0E-39	[3..188]	[4..190]
gi\|22776480, gi\|... - gi\|23098255\|ref\|NP_691721.1\| signal peptidase [Oceanobacillus iheyensis HTE831], gi\|22776480\|dbj\|BAC...	4.0E-38	[2..183]	[4..183]
gi\|52004210, gi\|... - gi\|52786376\|ref\|YP_092205.1\| SipW [Bacillus licheniformis ATCC 14580], gi\|52348878\|gb\|AAU41512.1\| Si...	3.0E-36	[1..189]	[1..192]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIWKVISN VISFVLFALM VCLAFVVISS KASGGDPTVM GYQFKSVLSG SMEPTFLTGS  60
   61 IIAIEPTKDG SKYQKGDVIT FKEKDEKIIT HRIIGVKDTN GKVMYETKGD NN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.045757
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [113-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGPDLEPVLA ENVIGKYADI TVPYAGYALN YANSKAGAAL LLIIPGVFLL GYSAITIFSA  60
   61 IRSIDGEKKE KKVEQSV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits