YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255892, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	440 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255892, gi|....

Description	E-value	Query Range	Subject Range
gi\|68343719, gi\|... - gi\|70729420\|ref\|YP_259158.1\| xanthine/uracil permease family protein [Pseudomonas fluorescens Pf-5],...	3.0E-62	[12..427]	[143..562]
gi\|42736692, gi\|... - gi\|42780772\|ref\|NP_978019.1\| xanthine permease [Bacillus cereus ATCC 10987], gi\|42736692\|gb\|AAS40627... gi\|222095296, gi... - gi\|222095296\|ref\|YP_002529356.1\| xanthine permease [Bacillus cereus Q1], gi\|221239354\|gb\|ACM12064.1\|... gi\|217959150, gi... - gi\|217959150\|ref\|YP_002337698.1\| xanthine permease [Bacillus cereus AH187], gi\|217064282\|gb\|ACJ78532... gi\|206747032, gi... - gi\|206975013\|ref\|ZP_03235928.1\| xanthine permease [Bacillus cereus H3081.97], gi\|206747032\|gb\|EDZ584... gi\|229138363, gi... - gi\|229138363\|ref\|ZP_04266957.1\| hypothetical protein bcere0013_14830 [Bacillus cereus BDRD-ST26], gi...	2.0E-61	[1..440]	[1..440]
gi\|41326541, gi\|... - gi\|62391201\|ref\|YP_226603.1\| xanthine/uracil permease [Corynebacterium glutamicum ATCC 13032], gi\|41...	4.0E-61	[3..434]	[32..470]
gi\|47566033, gi\|... - gi\|47566033\|ref\|ZP_00237071.1\| xanthine permease [Bacillus cereus G9241], gi\|47556950\|gb\|EAL15280.1\|...	4.0E-61	[1..440]	[1..440]
gi\|228656463, gi... - gi\|229126982\|ref\|ZP_04255990.1\| hypothetical protein bcere0015_14390 [Bacillus cereus BDRD-Cer4], gi... gi\|29895261, gi\|... - gi\|30019717\|ref\|NP_831348.1\| xanthine permease [Bacillus cereus ATCC 14579], gi\|29895261\|gb\|AAP08549... gi\|229043414, gi... - gi\|229043414\|ref\|ZP_04191130.1\| hypothetical protein bcere0027_14630 [Bacillus cereus AH676], gi\|228... gi\|228957943, gi... - gi\|228957943\|ref\|ZP_04119682.1\| hypothetical protein bthur0005_14560 [Bacillus thuringiensis serovar... gi\|228639279, gi... - gi\|229144271\|ref\|ZP_04272685.1\| hypothetical protein bcere0012_14340 [Bacillus cereus BDRD-ST24], gi...	5.0E-61	[1..440]	[1..440]
gi\|228650974, gi... - gi\|229132478\|ref\|ZP_04261329.1\| hypothetical protein bcere0014_14120 [Bacillus cereus BDRD-ST196], g... gi\|89157194, gi\|... - gi\|89204897\|ref\|ZP_01183472.1\| Xanthine/uracil permease [Bacillus weihenstephanensis KBAB4], gi\|8915...	7.0E-61	[1..440]	[1..440]
gi\|116628903, gi... - gi\|116628903\|ref\|YP_814075.1\| xanthine/uracil permease [Lactobacillus gasseri ATCC 33323], gi\|116094... gi\|238834564, gi... - gi\|238852870\|ref\|ZP_04643275.1\| xanthine permease [Lactobacillus gasseri 202-4], gi\|238834564\|gb\|EEQ...	1.0E-60	[1..436]	[4..441]
gi\|42518311, gi\|... - gi\|42518311\|ref\|NP_964241.1\| xanthine/uracil permease [Lactobacillus johnsonii NCC 533], gi\|41582595...	2.0E-60	[4..436]	[7..441]
gi\|152023855, gi... - gi\|89201037\|ref\|ZP_01179785.1\| Xanthine/uracil permease [Bacillus cereus subsp. cytotoxis NVH 391-98...	7.0E-60	[1..439]	[1..439]
gi\|25028823, gi\|... - gi\|25028823\|ref\|NP_738877.1\| putative purine permease [Corynebacterium efficiens YS-314], gi\|2349410...	2.0E-59	[3..422]	[17..443]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQHPFKIAS LGMQHMLAMY AGAIIVPLIV GGGLGLNQKE LTYLVSIDLL MCGVATILQA  60
   61 LSNRFFGIGL PVVLGCTFTA VGPMIAIGKQ YGVSSIYGAI IAAGLFVVIF AKLFGKLVKL 120
  121 FPPVVTGSVV TVIGVTLVPA AINDMAGGVG SKDFGSLENL ALAFGVLLFI IIMYRFFDGF 180
  181 IRSISILLGL LFGTIVAAFM GK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [203-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSLQAVGEAD WFHGIQPFYF GTPTFELTPI ITMILVACVG IVEATGVYFA LSDICNKKIG  60
   61 EKE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [266-440]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTKGYRAEGL AMVLGGIFNA FPYTTYSQNV GLVQLTGVRN RVIIYTCGGM LIALGFIPKI  60
   61 AAITTIIPKS VLGGAMLAMF GMVMAYGIKM LSSVDFGRQE NLLIVACSVG IGLGVTVVPT 120
  121 LFSQLPESIR ILTDNGIVLG SASAVLLNIV FNMVPQRKVK VKDEPVPMQS AVREA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits