YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256055, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256055, gi|....

Description	E-value	Query Range	Subject Range
gi\|18144401, gi\|... - gi\|18309723\|ref\|NP_561657.1\| cytochrome C-type biogenesis protein [Clostridium perfringens str. 13],...	4.0E-46	[5..220]	[3..223]
gi\|110674228, gi... - gi\|110799581\|ref\|YP_695190.1\| putative cytochrome C-type biogenesis protein [Clostridium perfringens...	9.0E-46	[5..220]	[3..223]
gi\|110802776, gi... - gi\|110802776\|ref\|YP_698047.1\| cytochrome C biogenesis protein [Clostridium perfringens SM101], gi\|11...	2.0E-45	[5..220]	[3..223]
DSBD_PHOLL - Thiol:disulfide interchange protein dsbD OS=Photorhabdus luminescens subsp. laumondii GN=dsbD PE=3 S... DSBD_PHOLL - Thiol:disulfide interchange protein DsbD OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15...	3.0E-44	[4..236]	[173..407]
DSBD_VIBPA - Thiol:disulfide interchange protein DsbD OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210... DSBD_VIBPA - Thiol:disulfide interchange protein DsbD OS=Vibrio parahaemolyticus GN=dsbD PE=3 SV=1	1.0E-43	[7..237]	[213..444]
DSBD_COLP3 - Thiol:disulfide interchange protein DsbD OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN...	3.0E-43	[2..232]	[191..423]
gi\|91228458, gi\|... - gi\|91228458\|ref\|ZP_01262382.1\| thiol:disulfide interchange protein precursor [Vibrio alginolyticus 1...	4.0E-43	[7..237]	[210..441]
gi\|78368470, gi\|... - gi\|78368470\|ref\|ZP_00838698.1\| Protein-disulfide reductase [Shewanella sp. PV-4], gi\|78359466\|gb\|EAP...	4.0E-43	[2..235]	[247..482]
gi\|45440353, gi\|... - gi\|45440353\|ref\|NP_991892.1\| thiol:disulfide interchange protein precursor [Yersinia pestis biovar M... gi\|229836603, gi... - gi\|229836603\|ref\|ZP_04456769.1\| thiol:disulfide interchange protein [Yersinia pestis Pestoides A], g...	5.0E-43	[2..237]	[188..425]
gi\|115515610, gi... - gi\|117626486\|ref\|YP_859809.1\| thiol:disulfide interchange protein precursor [Escherichia coli APEC O...	5.0E-43	[4..237]	[190..425]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAADLTIWL VAGAGVLSFI SPCSLPLYPS YLSYITGVSI QDLKENRGIM QKSAIIHTVF  60
   61 FMIGFSVIFY ALGLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSWIGITFSS NQKLIQQIGG IFIVLMGLFM TGLFQPKWLM AEKKVQYRSK STGYIRSILV  60
   61 GMTYAAGWTP CVGPIFSAVL MLGATNPEGA LLYITAYTLG FAVPFFVMAF FIGKIKWIVT 120
  121 YANVMMKIGG GMMIVTGILL YTNQMTKITA FFIRLFGGFT GF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits