YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261966, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261966, gi|....

Description	E-value	Query Range	Subject Range
gi\|222450603, gi... - gi\|222526724\|ref\|YP_002571195.1\| ABC transporter related [Chloroflexus sp. Y-400-fl], gi\|222450603\|g... gi\|163670063, gi... - gi\|76261358\|ref\|ZP_00768971.1\| ABC transporter related [Chloroflexus aurantiacus J-10-fl], gi\|761637...	1.0E-93	[3..233]	[10..246]
gi\|119720457, gi... - gi\|119720457\|ref\|YP_920952.1\| spermidine/putrescine ABC transporter ATPase subunit [Thermofilum pend...	1.0E-93	[1..231]	[1..235]
gi\|15643988, gi\|... - gi\|4981786\|gb\|AAD36307.1\|AE001779_9 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|281412971\|ref... - ABC transporter related protein [Thermotoga naphthophila RKU-10] gi\|170289367, gi... - gi\|170289367\|ref\|YP_001739605.1\| ABC transporter related [Thermotoga sp. RQ2], gi\|170176870\|gb\|ACB09... gi\|7442603 - pir\|\|A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	5.0E-93	[1..231]	[1..235]
gi\|78044045, gi\|... - gi\|78044045\|ref\|YP_359973.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Carboxydot...	6.0E-93	[3..233]	[5..256]
gi\|18894174, gi\|... - gi\|18978342\|ref\|NP_579699.1\| putative multiple sugar-binding transport ATP-binding protein [Pyrococc...	2.0E-92	[1..231]	[10..244]
gi\|7442577 - pir\|\|F72756 probable multiple sugar-binding transport ATP-binding protein APE0043 - Aeropyrum pernix... gi\|14600403, gi\|... - gi\|5103431\|dbj\|BAA78952.1\| 381aa long hypothetical multiple sugar-binding transport ATP-binding prot...	5.0E-92	[1..231]	[14..252]
gi\|148654949, gi... - gi\|148654949\|ref\|YP_001275154.1\| spermidine/putrescine ABC transporter ATPase subunit [Roseiflexus s...	6.0E-92	[1..231]	[1..235]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLQVNNIE TYLDQFHILQ GVSLAVEKGT ITVLFGRNGA GKTTTLRSVM GFHHIAHGEI  60
   61 YYDRTQVNGL STHLISRKGI GYVPENQGIF HDLTIEETFA LARGKGEEAE EKIEWMLELF 120
  121 PDLKQFWHKK SGLLSGGQKQ MLAISRAFIN SDGLLLIDEP SKGLSPIMIE KLMIAILKMK 180
  181 EKTTVLLVEQ NFMMASQIGD YFYIMDNGKI VHNGFMHELK EDKEMCHKYL GIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.69897
Match:	1v43A
Description:	Crystal Structure of ATPase subunit of ABC Sugar Transporter
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits